Evidence map›Paper›PMID 24554440›Full record

ArticleRNA (New York, N.Y.)2014

An atlas of chromatoid body components.

Oliver Meikar, Vasily V Vagin, Frédéric Chalmel, Karin Sõstar, Aurélie Lardenois, Molly Hammell, Ying Jin, Matteo Da Ros, Kaja A Wasik, Jorma Toppari and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 1 pooled it
17.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 1 synthesis or guideline pooled it, 116 citations in OpenAlex.

  1. Pooled it
  2. Regulation of Translation by PKA Signaling Pathway.International journal of molecular sciences · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. RNA Helicase A promotes small RNA biogenesis and sorting in germ cells.bioRxiv : the preprint server for biology · 2025
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. P-body-like condensates in the germline.Seminars in cell & developmental biology · 2024
    Review
  18. Article
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Oliver Meikar
Vasily V Vagin
Frédéric Chalmel
Karin Sõstar
Aurélie Lardenois
Molly Hammell
Ying Jin
Matteo Da Ros
Kaja A Wasik
Jorma Toppari
Gregory J Hannon
Noora Kotaja
Howard Hughes Medical Institute · USUniversity of Turku · FIInserm · FRUniversité Nantes Angers Le Mans · FR

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
MECHANISMS OF DSRNA-INDUCED GENE SILENCINGR01GM062534 · NIGMS · COLD SPRING HARBOR LABORATORY · PI HANNON, GREGORY J · 2000 to 2012
$4.3M
Roles of small RNAs in guarding germ cell genomesR37GM062534 · NIGMS · NEW YORK GENOME CENTER · PI HANNON, GREGORY J · 2013 to 2017
$2.0M
Cancer Research UK 21143NCI NIH HHS P30 CA045508NIGMS NIH HHS 5R01GM062534NIGMS NIH HHS R01 GM062534NIGMS NIH HHS R37 GM062534
6 · The paper itself

Abstract

The genome of male germ cells is actively transcribed during spermatogenesis to produce phase-specific protein-coding mRNAs and a considerable amount of different noncoding RNAs. Ribonucleoprotein (RNP) granule-mediated RNA regulation provides a powerful means to secure the quality and correct expression of the requisite transcripts. Haploid spermatids are characterized by a unique, unusually large cytoplasmic granule, the chromatoid body (CB), which emerges during the switch between the meiotic and post-meiotic phases of spermatogenesis. To better understand the role of the CB in male germ cell differentiation, we isolated CBs from mouse testes and revealed its full RNA and protein composition. We showed that the CB is mainly composed of RNA-binding proteins and other proteins involved RNA regulation. The CB was loaded with RNA, including pachytene piRNAs, a diverse set of mRNAs, and a number of uncharacterized long noncoding transcripts. The CB was demonstrated to accumulate nascent RNA during all the steps of round spermatid differentiation. Our results revealed the CB as a large germ cell-specific RNP platform that is involved in the control of the highly complex transcriptome of haploid male germ cells.

Indexed as

AnimalsBiomarkersCytoplasmic GranulesFluorescent Antibody TechniqueGene Expression ProfilingGerm CellsMaleMiceOligonucleotide Array Sequence AnalysisReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA-Binding ProteinsRNA, MessengerSpermatidsSpermatogenesisBiomarkersRNA-Binding ProteinsRNA, Messengerchromatoid bodymale germ cellspiRNApost-transcriptionalribonucleoprotein granule

Identifiers

PMID24554440
PMCPMC3964910
OpenAlexW1989800916

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.