Evidence map›Paper›PMID 24553786›Full record

ArticleFunctional & integrative genomics2014

Heavy metals induce oxidative stress and genome-wide modulation in transcriptome of rice root.

Sonali Dubey, Manju Shri, Prashant Misra, Deepika Lakhwani, Sumit Kumar Bag, Mehar H Asif, Prabodh Kumar Trivedi, Rudro Deo Tripathi, Debasis Chakrabarty

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Article in Functional & integrative genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 113 citations in OpenAlex.

  1. Review
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  11. Heavy-Metal Phytoremediation from Livestock Wastewater and Exploitation of Exhausted Biomass.International journal of environmental research and public health · 2021
    Review
  12. Review
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  15. Article
  16. Safe Cultivation ofMicroorganisms · 2019
    Article
  17. Article
  18. Long- and short-term protective responses of rice seedling to combat Cr(VI) toxicity.Environmental science and pollution research international · 2018
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Sonali DubeyCouncil of Scientific and Industrial Research, National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226001, India.
Manju Shri
Prashant Misra
Deepika Lakhwani
Sumit Kumar Bag
Mehar H Asif
Prabodh Kumar Trivedi
Rudro Deo Tripathi
Debasis Chakrabarty
Council of Scientific and Industrial Research · INNational Botanical Research Institute · INAcademy of Scientific and Innovative Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Industrial growth, ecological disturbances and agricultural practices have contaminated the soil and water with many harmful compounds, including heavy metals. These heavy metals affect growth and development of plants as well as cause severe human health hazards through food chain contamination. In past, studies have been made to identify biochemical and molecular networks associated with heavy metal toxicity and uptake in plants. Studies suggested that most of the physiological and molecular processes affected by different heavy metals are similar to those affected by other abiotic stresses. To identify common and unique responses by different metals, we have studied biochemical and genome-wide modulation in transcriptome of rice (IR-64 cultivar) root after exposure to cadmium (Cd), arsenate [As(V)], lead (Pb) and chromium [Cr(VI)] in hydroponic condition. We observed that root tissue shows variable responses for antioxidant enzyme system for different heavy metals. Genome-wide expression analysis suggests variable number of genes differentially expressed in root in response to As(V), Cd, Pb and Cr(VI) stresses. In addition to unique genes, each heavy metal modulated expression of a large number of common genes. Study also identified cis-acting regions of the promoters which can be determinants for the modulated expression of the genes in response to different heavy metals. Our study advances understanding related to various processes and networks which might be responsible for heavy metal stresses, accumulation and detoxification.

Indexed as

Gene Expression Regulation, PlantGenome, PlantTranscriptomeArsenatesCadmiumChromiumGene Expression ProfilingHydroponicsLeadMetabolic Networks and PathwaysOryzaOxidative StressPlant ProteinsPlant RootsPromoter Regions, GeneticRNA, PlantArsenatesarsenic acidCadmiumChromiumLeadPlant ProteinsRNA, PlantWater Pollutants, Chemical

Identifiers

PMID24553786
OpenAlexW2088167733

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.