Evidence map›Paper›PMID 24553401›Full record

ArticleScientific reports2014

The structural basis of an NADP⁺-independent dithiol oxidase in FK228 biosynthesis.

Jie Li, Cheng Wang, Zhi-Min Zhang, Yi-Qiang Cheng, Jiahai Zhou

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Convergent evolution in toxin detection and resistance provides evidence for conserved bacterial-fungal interactions.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Review
  4. Unprecedented pathway of reducing equivalents in a diflavin-linked disulfide oxidoreductase.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Jie Li1] State Key Laboratory of Bio-organic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China [2].
Cheng Wang1] Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI 53201, USA [2].
Zhi-Min ZhangState Key Laboratory of Bio-organic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China.
Yi-Qiang Cheng1] Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI 53201, USA [2] UNT System College of Pharmacy, University of North Texas Health Science Center, Forth Worth, TX 76107, USA.
Jiahai Zhou1] State Key Laboratory of Bio-organic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China [2] Key Laboratory of Combinatorial Biosynthesis and Drug Discovery, Ministry of Education, School of Pharmaceutical Sciences, Wuhan University, 185 East Lake Road, Wuhan 430071, China.
Shanghai Institute of Organic Chemistry · CNUniversity of Wisconsin–Milwaukee · USWuhan University · CN

Funding

Discover and Engineer New Histone Deacetylase Inhibitors as Anticancer AgentsR01CA152212 · NCI · UNIVERSITY OF WISCONSIN MILWAUKEE · PI CHENG, ERIC YIQIANG · 2010 to 2014
$1.1M
NCI NIH HHS R01 CA152212NCI NIH HHS R01CA152212
6 · The paper itself

Abstract

The disulfide bond is unusual in natural products and critical for thermal stability, cell permeability and bioactivity. DepH from Chromobacterium violaceum No. 968 is an FAD-dependent enzyme responsible for catalyzing the disulfide bond formation of FK228, an anticancer prodrug approved for the treatment of cutaneous T-cell lymphoma. Here we report the crystal structures of DepH and DepH complexed with a substrate analogue S,S'-dimethyl FK228 at 1.82 Å and 2.00 Å, respectively. Structural and biochemical analyses revealed that DepH, in contrast to the well characterized low molecular weight thioredoxin reductases (LMW TrxRs), is an NADP(+)-independent dithiol oxidase. DepH not only lacks a conserved GGGDXAXE motif necessary for NADP(+) binding in the canonical LMW TrxRs, but also contains a 11-residue sequence which physically impedes the binding of NADP(+). These observations explain the difference between NADP(+)-independent small molecule dithiol oxidases and NADP(+)-dependent thioredoxin reductases and provide insights for understanding the catalytic mechanism of dithiol oxidases involved in natural product biosynthesis.

Indexed as

Amino Acid MotifsBinding SitesBiocatalysisChromobacteriumCrystallography, X-RayDepsipeptidesNADPOxidoreductases Acting on Sulfur Group DonorsProtein Structure, TertiaryRecombinant ProteinsThioredoxin-Disulfide ReductaseDepsipeptidesNADPOxidoreductases Acting on Sulfur Group DonorsRecombinant ProteinsromidepsinThioredoxin-Disulfide Reductase

Identifiers

PMID24553401
PMCPMC4894451
OpenAlexW2003981732

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.