Evidence map›Paper›PMID 24553127›Full record

ReviewDNA repair2014

Insight into the cooperative DNA binding of the O⁶-alkylguanine DNA alkyltransferase.

Ingrid Tessmer, Michael G Fried

Open access · greenAbstract readReview
In one paragraph

Review in DNA repair, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Every OGT Is Illuminated … by Fluorescent and Synchrotron Lights.International journal of molecular sciences · 2017
    Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Ingrid TessmerUniversity of Wuerzburg, Rudolf Virchow Center for Experimental Biomedicine, 97080 Wuerzburg, Germany. Electronic address: Ingrid.Tessmer@virchow.uni-wuerzburg.de.
Michael G FriedCenter for Structural Biology, Department of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, KY 40536, USA. Electronic address: Michael.Fried@uky.edu.
University of Kentucky · USUniversity of Würzburg · DE

Funding

COOPERATIVE INTERACTIONS IN DNA REPAIRR01GM070662 · NIGMS · UNIVERSITY OF KENTUCKY · PI FRIED, MICHAEL G. · 2004 to 2010
$1.4M
NIGMS NIH HHS GM-070662NIGMS NIH HHS R01 GM070662
6 · The paper itself

Abstract

The O(6)-alkylguanine DNA alkyltransferase (AGT) is a highly conserved protein responsible for direct repair of alkylated guanine and to a lesser degree thymine bases. While specific DNA lesion-bound complexes in crystal structures consist of monomeric AGT, several solution studies have suggested that cooperative DNA binding plays a role in the physiological activities of AGT. Cooperative AGT-DNA complexes have been described by theoretical models, which can be tested by atomic force microscopy (AFM). Direct access to structural features of AGT-DNA complexes at the single molecule level by AFM imaging revealed non-specifically bound, cooperative complexes with limited cluster length. Implications of cooperative binding in AGT-DNA interactions are discussed.

Indexed as

Amino Acid SequenceBase SequenceDNADNA RepairHumansMicroscopy, Atomic ForceMolecular Docking SimulationMolecular Sequence DataO(6)-Methylguanine-DNA MethyltransferaseProtein BindingDNAO(6)-Methylguanine-DNA MethyltransferaseAtomic force microscopy (AFM)Cooperative protein–DNA interactionsDNA repairO(6)-alkylguanine DNA alkyltransferase (AGT)Single molecule imaging

Identifiers

PMID24553127
PMCPMC4111990
OpenAlexW2055381727

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.