Evidence map›Paper›PMID 24552817›Full record

ArticleCell cycle (Georgetown, Tex.)2014

Extensive sequence variation in the 3' untranslated region of the KRAS gene in lung and ovarian cancer cases.

Minlee Kim, Xiaowei Chen, Lena J Chin, Trupti Paranjape, William C Speed, Kenneth K Kidd, Hongyu Zhao, Joanne B Weidhaas, Frank J Slack

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Interplay between K-RAS and miRNAs.Trends in cancer · 2022
    Review
  9. [Role and Significance of Bioactive Substances in Sputum
 in the Diagnosis of Lung Cancer].Zhongguo fei ai za zhi = Chinese journal of lung cancer · 2021
    Review
  10. Article
  11. Article
  12. Association ofAging · 2019
    Article
  13. Article
  14. Multidimensional communication of microRNAs and long non-coding RNAs in lung cancer.Journal of cancer research and clinical oncology · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. MicroRNA-613 inhibited ovarian cancer cell proliferation and invasion by regulating KRAS.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  20. Association between theJournal of Cancer · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Minlee KimDepartment of Molecular, Cellular, and Developmental Biology; Yale University; New Haven, CT USA.
Xiaowei ChenDepartment of Molecular, Cellular, and Developmental Biology; Yale University; New Haven, CT USA; Program in Computational Biology and Bioinformatics; Yale University School of Medicine; New Haven, CT USA.
Lena J ChinDepartment of Molecular, Cellular, and Developmental Biology; Yale University; New Haven, CT USA.
Trupti ParanjapeDepartment of Therapeutic Radiology; Yale University School of Medicine; New Haven, CT USA.
William C SpeedDepartment of Genetics; Yale University School of Medicine; New Haven, CT USA.
Kenneth K KiddDepartment of Genetics; Yale University School of Medicine; New Haven, CT USA.
Hongyu ZhaoProgram in Computational Biology and Bioinformatics; Yale University School of Medicine; New Haven, CT USA; Department of Genetics; Yale University School of Medicine; New Haven, CT USA.
Joanne B WeidhaasDepartment of Therapeutic Radiology; Yale University School of Medicine; New Haven, CT USA.
Frank J SlackDepartment of Molecular, Cellular, and Developmental Biology; Yale University; New Haven, CT USA.
University of New Haven · USYale University · USInstitut thématique Génétique, génomique et bioinformatique · FR

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
MicroRNAs to Understand Cause and Outcome in Breast CancerR01CA157749 · NCI · YALE UNIVERSITY · PI SLACK, FRANK J., WEIDHAAS, JOANNE B · 2012 to 2016
$1.7M
NCI NIH HHS R01 CA157749
6 · The paper itself

Abstract

While cancer is a serious health issue, there are very few genetic biomarkers that predict predisposition, prognosis, diagnosis, and treatment response. Recently, sequence variations that disrupt microRNA (miRNA)-mediated regulation of genes have been shown to be associated with many human diseases, including cancer. In an early example, a variant at one particular single nucleotide polymorphism (SNP) in a let-7 miRNA complementary site in the 3' untranslated region (3' UTR) of the KRAS gene was associated with risk and outcome of various cancers. The KRAS oncogene is an important regulator of cellular proliferation, and is frequently mutated in cancers. To discover additional sequence variants in the 3' UTR of KRAS with the potential as genetic biomarkers, we resequenced the complete region of the 3' UTR of KRAS in multiple non-small cell lung cancer and epithelial ovarian cancer cases either by Sanger sequencing or capture enrichment followed by high-throughput sequencing. Here we report a comprehensive list of sequence variations identified in cases, with some potentially dysregulating expression of KRAS by altering putative miRNA complementary sites. Notably, rs712, rs9266, and one novel variant may have a functional role in regulation of KRAS by disrupting complementary sites of various miRNAs, including let-7 and miR-181.

Indexed as

3' Untranslated RegionsPolymorphism, Single NucleotideCarcinoma, Non-Small-Cell LungCarcinoma, Ovarian EpithelialCase-Control StudiesFemaleHumansLung NeoplasmsMicroRNAsNeoplasms, Glandular and EpithelialOvarian NeoplasmsProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)ras Proteins3' Untranslated RegionsKRAS protein, humanMicroRNAsMIrn181 microRNA, humanmirnlet7 microRNA, humanProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)ras Proteins3′ UTREOCepithelial ovarian cancerKRASlet-7microRNAnon-small cell lung cancerNSCLCsequence variantSNP

Identifiers

PMID24552817
PMCPMC3984301
OpenAlexW2048225142

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.