ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2013
Semantic annotation of clinical events for generating a problem list.
Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
10 citing papers in PubMed.
- A Systematic Temporal Extraction Pipeline for Medical Concepts in Clinical Notes.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2023Article
- Lexicon Development for COVID-19-related Concepts Using Open-source Word Embedding Sources: An Intrinsic and Extrinsic Evaluation.JMIR medical informatics · 2021Article
- Toward Understanding Clinical Context of Medication Change Events in Clinical Narratives.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2021Article
- A Preliminary Characterization of Canonicalized and Non-Canonicalized Section Headers Across Variable Clinical Note Types.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2020Article
- Determining Onset for Familial Breast and Colorectal Cancer from Family History Comments in the Electronic Health Record.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2019Article
- Assessing Information Congruence of Documented Cardiovascular Disease between Electronic Dental and Medical Records.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2018Article
- Management of Dynamic Biomedical Terminologies: Current Status and Future Challenges.Yearbook of medical informatics · 2015Review
- Towards a Generalizable Time Expression Model for Temporal Reasoning in Clinical Notes.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2015Article
- An integrated billing application to streamline clinician workflow.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2014Article
- Enabling claims-based decision support through non-interruptive capture of admission diagnoses and provider billing codes.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2014Article
Corrections and comments
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Authors and funding
6 authors.
Funding
Abstract
We present a pilot study of an annotation schema representing problems and their attributes, along with their relationship to temporal modifiers. We evaluated the ability for humans to annotate clinical reports using the schema and assessed the contribution of semantic annotations in determining the status of a problem mention as active, inactive, proposed, resolved, negated, or other. Our hypothesis is that the schema captures semantic information useful for generating an accurate problem list. Clinical named entities such as reference events, time points, time durations, aspectual phase, ordering words and their relationships including modifications and ordering relations can be annotated by humans with low to moderate recall. Once identified, most attributes can be annotated with low to moderate agreement. Some attributes - Experiencer, Existence, and Certainty - are more informative than other attributes - Intermittency and Generalized/Conditional - for predicting a problem mention's status. Support vector machine outperformed Naïve Bayes and Decision Tree for predicting a problem's status.
Indexed as
Identifiers
24551392PMC3900128What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.