Evidence map›Paper›PMID 24551389›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2013

Automatically extracting clinically useful sentences from UpToDate to support clinicians' information needs.

Rashmi Mishra, Guilherme Del Fiol, Halil Kilicoglu, Siddhartha Jonnalagadda, Marcelo Fiszman

Abstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Classification of Clinically Useful Sentences in MEDLINE.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rashmi MishraDepartment of Biomedical Informatics, University of Utah, Salt Lake City, UT, USA.
Guilherme Del FiolDepartment of Biomedical Informatics, University of Utah, Salt Lake City, UT, USA.
Halil KilicogluLister Hill Center, National Library of Medicine, Bethesda, MD, USA.
Siddhartha JonnalagaddaNatural Language Processing Group, Mayo Clinic, Rochester, MN, USA.
Marcelo FiszmanLister Hill Center, National Library of Medicine, Bethesda, MD, USA.

Funding

National Biomedical Information ServicesZIHLM200888 · NLM · NATIONAL LIBRARY OF MEDICINE · PI PALTOO, DINA · 2009 to 2025
$5200.7M
Meeting Clinicians' Information Needs with Highly Tailored Knowledge SummariesR01LM011416 · NLM · UNIVERSITY OF UTAH · PI DEL FIOL, GUILHERME · 2013 to 2016
$1.3M
Improving the Efficiency and Efficacy in Authoring Essential Clinical FAQsR00LM011389 · NLM · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JONNALAGADDA, SIDDHARTHA REDDY · 2013 to 2015
$665k
Context-Aware Knowledge Delivery into Electronic Health RecordsK01HS018352 · AHRQ · UNIVERSITY OF UTAH · PI DEL FIOL, GUILHERME · 2009 to 2012
$568k
AHRQ HHS K01 HS018352AHRQ HHS K01HS018352NLM NIH HHS R00 LM011389NLM NIH HHS R01 LM011416
6 · The paper itself

Abstract

unlabelledClinicians raise several information needs in the course of care. Most of these needs can be met by online health knowledge resources such as UpToDate. However, finding relevant information in these resources often requires significant time and cognitive effort.

objectiveTo design and assess algorithms for extracting from UpToDate the sentences that represent the most clinically useful information for patient care decision making.

methodsWe developed algorithms based on semantic predications extracted with SemRep, a semantic natural language processing parser. Two algorithms were compared against a gold standard composed of UpToDate sentences rated in terms of clinical usefulness.

resultsClinically useful sentences were strongly correlated with predication frequency (correlation= 0.95). The two algorithms did not differ in terms of top ten precision (53% vs. 49%; p=0.06).

conclusionsSemantic predications may serve as the basis for extracting clinically useful sentences. Future research is needed to improve the algorithms.

Indexed as

AlgorithmsDatabases as TopicNatural Language ProcessingDecision Support Systems, ClinicalHumansInformation Storage and RetrievalSemantics

Identifiers

PMID24551389
PMCPMC3900230

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.