Evidence map›Paper›PMID 24551371›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2013

Comparison and combination of several MeSH indexing approaches.

Antonio Jose Jimeno Yepes, James G Mork, Dina Demner-Fushman, Alan R Aronson

Abstract readComparative Study
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. A probabilistic automated tagger to identify human-related publications.Database : the journal of biological databases and curation · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Convolutional Neural Networks for Biomedical Text Classification: Application in Indexing Biomedical Articles.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2015
    Article
  10. Article
  11. Article
  12. Overview of the gene ontology task at BioCreative IV.Database : the journal of biological databases and curation · 2014
    Article
  13. Stochastic Gradient Descent and the Prediction of MeSH for PubMed Records.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Antonio Jose Jimeno YepesNICTA Victoria Research Lab, Melbourne VIC 3010, Australia; ; National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA.
James G MorkNational Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Dina Demner-FushmanNational Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Alan R AronsonNational Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA.

Funding

National Biomedical Information ServicesZIHLM200888 · NLM · NATIONAL LIBRARY OF MEDICINE · PI PALTOO, DINA · 2009 to 2025
$5200.7M
Intramural NIH HHS
6 · The paper itself

Abstract

MeSH indexing of MEDLINE is becoming a more difficult task for the group of highly qualified indexing staff at the US National Library of Medicine, due to the large yearly growth of MEDLINE and the increasing size of MeSH. Since 2002, this task has been assisted by the Medical Text Indexer or MTI program. We extend previous machine learning analysis by adding a more diverse set of MeSH headings targeting examples where MTI has been shown to perform poorly. Machine learning algorithms exceed MTI's performance on MeSH headings that are used very frequently and headings for which the indexing frequency is very low. We find that when we combine the MTI suggestions and the prediction of the learning algorithms, the performance improves compared to any single method for most of the evaluated MeSH headings.

Indexed as

AlgorithmsArtificial IntelligenceMedical Subject HeadingsNatural Language ProcessingAbstracting and IndexingMEDLINE

Identifiers

PMID24551371
PMCPMC3900212

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.