ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2013
A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal.
Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Missing lateral relationships in top-level concepts of an ontology.BMC medical informatics and decision making · 2020Article
- Outlier concepts auditing methodology for a large family of biomedical ontologies.BMC medical informatics and decision making · 2020Article
- Assessing the practice of biomedical ontology evaluation: Gaps and opportunities.Journal of biomedical informatics · 2018Review
- Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology.Journal of biomedical informatics · 2017Article
- An empirical analysis of ontology reuse in BioPortal.Journal of biomedical informatics · 2017Article
- From SNOMED CT to Uberon: Transferability of evaluation methodology between similarly structured ontologies.Artificial intelligence in medicine · 2017Article
- Introducing the Big Knowledge to Use (BK2U) challenge.Annals of the New York Academy of Sciences · 2017Review
- A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies.Journal of biomedical informatics · 2016Article
- Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies.Journal of biomedical informatics · 2016Article
- FEDRR: fast, exhaustive detection of redundant hierarchical relations for quality improvement of large biomedical ontologies.BioData mining · 2016Article
- Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network.Journal of biomedical informatics · 2015Article
- A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships.Journal of the American Medical Informatics Association : JAMIA · 2015Article
- Abstraction networks for terminologies: Supporting management of "big knowledge".Artificial intelligence in medicine · 2015Review
- Sculpting the UMLS Refined Semantic Network.Online journal of public health informatics · 2014Article
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
BioPortal contains over 300 ontologies, for which quality assurance (QA) is critical. Abstraction networks (ANs), compact summarizations of ontology structure and content, have been used in such QA efforts, typically in a "one-off" manner for a single ontology. Ontologies can be characterized-independently of knowledge-content focus-from a structural standpoint leading to the formulation of ontology families. A family is defined as a set of ontologies satisfying some overarching condition regarding their structural features. Seven such families, comprising 186 ontologies, are identified. To increase efficiency, a new family-based QA framework is introduced in which an automated, uniform AN derivation technique and accompanying semi-automated, uniform QA regimen are applicable to the ontologies of a given family. Specifically, across an entire family, the QA efforts exploit family-wide AN features in the characterization of sets of classes that are more likely to harbor errors. The approach is demonstrated on the Cancer Chemoprevention BioPortal ontology.
Indexed as
Identifiers
24551360PMC3900201What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.