Evidence map›Paper›PMID 24551356›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2013

Using natural language processing on the free text of clinical documents to screen for evidence of homelessness among US veterans.

Adi V Gundlapalli, Marjorie E Carter, Miland Palmer, Thomas Ginter, Andrew Redd, Steven Pickard, Shuying Shen, Brett South, Guy Divita, Scott Duvall and 3 more

Abstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  12. Automated identification of eviction status from electronic health record notes.Journal of the American Medical Informatics Association : JAMIA · 2023
    Article
  13. Article
  14. Article
  15. Capturing Individual-level Social Determinants from Clinical Text.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2023
    Article
  16. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Adi V GundlapalliVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;
Marjorie E CarterVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;
Miland PalmerVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;
Thomas GinterVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;
Andrew ReddVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;
Steven PickardVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;
Shuying ShenVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;
Brett SouthVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;
Guy DivitaVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;
Scott DuvallVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;
Thien M NguyenVA Boston Healthcare System, Jamaica Plain, MA.
Leonard W D'AvolioVA Boston Healthcare System, Jamaica Plain, MA.
Matthew SamoreVA Salt Lake City Health Care System, Salt Lake City, UT ; University of Utah School of Medicine, Salt Lake City, UT;

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Information retrieval algorithms based on natural language processing (NLP) of the free text of medical records have been used to find documents of interest from databases. Homelessness is a high priority non-medical diagnosis that is noted in electronic medical records of Veterans in Veterans Affairs (VA) facilities. Using a human-reviewed reference standard corpus of clinical documents of Veterans with evidence of homelessness and those without, an open-source NLP tool (Automated Retrieval Console v2.0, ARC) was trained to classify documents. The best performing model based on document level work-flow performed well on a test set (Precision 94%, Recall 97%, F-Measure 96). Processing of a naïve set of 10,000 randomly selected documents from the VA using this best performing model yielded 463 documents flagged as positive, indicating a 4.7% prevalence of homelessness. Human review noted a precision of 70% for these flags resulting in an adjusted prevalence of homelessness of 3.3% which matches current VA estimates. Further refinements are underway to improve the performance. We demonstrate an effective and rapid lifecycle of using an off-the-shelf NLP tool for screening targets of interest from medical records.

Indexed as

AlgorithmsNatural Language ProcessingData MiningHumansIll-Housed PersonsUnited StatesVeterans

Identifiers

PMID24551356
PMCPMC3900197

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.