ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2013
Design and evaluation of a bacterial clinical infectious diseases ontology.
Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- A fourfold pathogen reference ontology suite.Journal of biomedical semantics · 2025Article
- A Fourfold Pathogen Reference Ontology Suite.ArXiv · 2025Article
- Design and Evaluation of a Postpartum Depression Ontology.Applied clinical informatics · 2022Article
- A refined methodology for validation of information models derived from flowsheet data and applied to a genitourinary case.Journal of the American Medical Informatics Association : JAMIA · 2020Article
- Digital microbiology.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2020Review
- Developing an ontology for representing the domain knowledge specific to non-pharmacological treatment for agitation in dementia.Alzheimer's & dementia (New York, N. Y.) · 2020Article
- Bacterial clinical infectious diseases ontology (BCIDO) dataset.Data in brief · 2016Article
- Combining expert knowledge and knowledge automatically acquired from electronic data sources for continued ontology evaluation and improvement.Journal of biomedical informatics · 2015Article
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Authors and funding
7 authors.
Funding
Abstract
With antimicrobial resistance increasing worldwide, there is a great need to use automated antimicrobial decision support systems (ADSSs) to lower antimicrobial resistance rates by promoting appropriate antimicrobial use. However, they are infrequently used mostly because of their poor interoperability with different health information technologies. Ontologies can augment portable ADSSs by providing an explicit knowledge representation for biomedical entities and their relationships, helping to standardize and integrate heterogeneous data resources. We developed a bacterial clinical infectious diseases ontology (BCIDO) using Protégé-OWL. BCIDO defines a controlled terminology for clinical infectious diseases along with domain knowledge commonly used in hospital settings for clinical infectious disease treatment decision-making. BCIDO has 599 classes and 2355 object properties. Terms were imported from or mapped to Systematized Nomenclature of Medicine, Unified Medical Language System, RxNorm and National Center for Bitechnology Information Organismal Classification where possible. Domain expert evaluation using the "laddering" technique, ontology visualization, and clinical notes and scenarios, confirmed the correctness and potential usefulness of BCIDO.
Indexed as
Identifiers
24551353PMC3900194What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.