Evidence map›Paper›PMID 24551085›Full record

ArticlePloS one2014

Evaluation of candidate nephropathy susceptibility genes in a genome-wide association study of African American diabetic kidney disease.

Nicholette D Palmer, Maggie C Y Ng, Pamela J Hicks, Poorva Mudgal, Carl D Langefeld, Barry I Freedman, Donald W Bowden

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it, 59 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Susceptibility ofFrontiers in medicine · 2021
    Article
  12. Article
  13. A Mutation inJournal of the American Society of Nephrology : JASN · 2020
    Article
  14. Review
  15. Article
  16. Genetics of Obesity in Diverse Populations.Current diabetes reports · 2018
    Review
  17. Review
  18. Article
  19. Review
  20. The (CTG)The Indian journal of medical research · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Nicholette D PalmerDepartment of Biochemistry, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America ; Center for Genomics and Personalized Medicine Research, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America ; Diabetes Research Center, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America.
Maggie C Y NgCenter for Genomics and Personalized Medicine Research, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America ; Diabetes Research Center, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America.
Pamela J HicksDepartment of Biochemistry, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America.
Poorva MudgalDiabetes Research Center, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America.
Carl D LangefeldCenter for Public Health Genomics and Department of Biostatistical Sciences, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America.
Barry I FreedmanCenter for Genomics and Personalized Medicine Research, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America ; Diabetes Research Center, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America ; Department of Internal Medicine, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America.
Donald W BowdenDepartment of Biochemistry, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America ; Center for Genomics and Personalized Medicine Research, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America ; Diabetes Research Center, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America ; Department of Internal Medicine, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America.
Wake Forest University · US

Funding

WORKER PROTECTION AGAINST AIRBORNE INFLUENZA - A PILOT STUDYM01RR007122 · NCRR · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HUNDLEY, WILLIAM GREGORY · 1992 to 2010
$35.2M
Genetics of African American Type 2 DiabetesR01DK066358 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI NG, MAGGIE · 2003 to 2019
$6.2M
MAPPING GENES FOR NIDDM NEPHROPATHY IN AFRICAN AMERICANSR01DK053591 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI BOWDEN, DONALD W · 1998 to 2015
$5.6M
Genetic Analysis of African American Hypertensive End-Stage Renal DiseaseR01DK070941 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI FREEDMAN, BARRY IRA · 2006 to 2015
$4.7M
Natural History of MYH9-Associated NephropathyR01DK084149 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI FREEDMAN, BARRY IRA · 2009 to 2012
$2.3M
GENETIC ANALYSIS OF HUMAN HYPERTENSIVE ESRDR01HL056266 · NHLBI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI FREEDMAN, BARRY IRA · 1997 to 2001
$466k
A Whole Genome Association Search for Type 2 Diabetes Genes in African AmericansK99DK081350 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ALLRED, NICHOLETTE D. · 2009 to 2009
$84k
NCRR NIH HHS M01 RR007122NCRR NIH HHS M01 RR07122NHLBI NIH HHS R01 HL56266NIDDK NIH HHS K99 DK081350NIDDK NIH HHS R01 DK053591NIDDK NIH HHS R01 DK066358NIDDK NIH HHS R01 DK 070941NIDDK NIH HHS R01 DK070941NIDDK NIH HHS R01 DK 084149NIDDK NIH HHS R01 DK084149
6 · The paper itself

Abstract

Type 2 diabetes (T2D)-associated end-stage kidney disease (ESKD) is a complex disorder resulting from the combined influence of genetic and environmental factors. This study contains a comprehensive genetic analysis of putative nephropathy loci in 965 African American (AA) cases with T2D-ESKD and 1029 AA population-based controls extending prior findings. Analysis was based on 4,341 directly genotyped and imputed single nucleotide polymorphisms (SNPs) in 22 nephropathy candidate genes. After admixture adjustment and correction for multiple comparisons, 37 SNPs across eight loci were significantly associated (1.6E-05<P(emp)<0.049). Among these, variants in MYH9 were the most significant (1.6E-05<P(emp)<0.049), followed by additional chromosome 22 loci (APOL1, SFI1, and LIMK2). Nominal signals were observed in AGTR1, RPS12, CHN2 and CNDP1. Additional adjustment for APOL1 G1/G2 risk variants attenuated association at MYH9 (P(emp) = 0.00026-0.043) while marginally improving significance of other APOL1 SNPs (rs136161, rs713753, and rs767855; P(emp) = 0.0060-0.037); association at other loci was markedly reduced except for CHN2 (chimerin; rs17157914, P(emp)= 0.029). In addition, SNPs in other candidate loci (FRMD3 and TRPC6) trended toward association with T2D-ESKD (P(emp)<0.05). These results suggest that risk contributed by putative nephropathy genes is shared across populations of African and European ancestry.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAgedApolipoprotein L1ApolipoproteinsBlack or African AmericanDiabetic NephropathiesFemaleGenetic LociGenome-Wide Association StudyHaplotypesHumansKidney Failure, ChronicLipoproteins, HDLMaleMiddle AgedAPOL1 protein, humanApolipoprotein L1ApolipoproteinsLipoproteins, HDLMolecular Motor ProteinsMYH9 protein, humanMyosin Heavy Chains

Identifiers

PMID24551085
PMCPMC3923777
OpenAlexW2090234003

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.