ArticleFrontiers in neuroinformatics2014
Equation-oriented specification of neural models for simulations.
Article in Frontiers in neuroinformatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.
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Who cites it
53 citing papers in PubMed.
- Recent Progress in Brain Network Models for Medical Applications: A Review.Health data science · 2024Review
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- Long-Range Amplitude Coupling Is Optimized for Brain Networks That Function at Criticality.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2022Article
- Brian2CUDA: Flexible and Efficient Simulation of Spiking Neural Network Models on GPUs.Frontiers in neuroinformatics · 2022Article
- Event-Based Update of Synapses in Voltage-Based Learning Rules.Frontiers in neuroinformatics · 2021Article
- Polynomial, piecewise-Linear, Step (PLS): A Simple, Scalable, and Efficient Framework for Modeling Neurons.Frontiers in neuroinformatics · 2021Article
- A neural algorithm for Drosophila linear and nonlinear decision-making.Scientific reports · 2020Article
- Pre-stimulus phase and amplitude regulation of phase-locked responses are maximized in the critical state.eLife · 2020Article
- Biophysically grounded mean-field models of neural populations under electrical stimulation.PLoS computational biology · 2020Article
- Pulvinar Modulates Contrast Responses in the Visual Cortex as a Function of Cortical Hierarchy.Cerebral cortex (New York, N.Y. : 1991) · 2020Article
- Neural Interactions in Developing Rhythmogenic Spinal Networks: Insights From Computational Modeling.Frontiers in neural circuits · 2020Article
- Article
- Inferring and validating mechanistic models of neural microcircuits based on spike-train data.Nature communications · 2019Article
- Highly structured, partner-sex- and subject-sex-dependent cortical responses during social facial touch.Nature communications · 2019Article
- Article
- How to correctly quantify neuronal phase-response curves from noisy recordings.Journal of computational neuroscience · 2019Article
- Weak electric fields promote resonance in neuronal spiking activity: Analytical results from two-compartment cell and network models.PLoS computational biology · 2019Article
- Electrical synapses regulate both subthreshold integration and population activity of principal cells in response to transient inputs within canonical feedforward circuits.PLoS computational biology · 2019Article
- A Swarm Optimization Solver Based on Ferroelectric Spiking Neural Networks.Frontiers in neuroscience · 2019Article
Corrections and comments
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4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Simulating biological neuronal networks is a core method of research in computational neuroscience. A full specification of such a network model includes a description of the dynamics and state changes of neurons and synapses, as well as the synaptic connectivity patterns and the initial values of all parameters. A standard approach in neuronal modeling software is to build network models based on a library of pre-defined components and mechanisms; if a model component does not yet exist, it has to be defined in a special-purpose or general low-level language and potentially be compiled and linked with the simulator. Here we propose an alternative approach that allows flexible definition of models by writing textual descriptions based on mathematical notation. We demonstrate that this approach allows the definition of a wide range of models with minimal syntax. Furthermore, such explicit model descriptions allow the generation of executable code for various target languages and devices, since the description is not tied to an implementation. Finally, this approach also has advantages for readability and reproducibility, because the model description is fully explicit, and because it can be automatically parsed and transformed into formatted descriptions. The presented approach has been implemented in the Brian2 simulator.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.