ArticleFrontiers in neuroscience2014
An efficient automated parameter tuning framework for spiking neural networks.
Article in Frontiers in neuroscience, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- CBGTPy: An extensible cortico-basal ganglia-thalamic framework for modeling biological decision making.PloS one · 2025Article
- Automated customization of large-scale spiking network models to neuronal population activity.Nature computational science · 2024Article
- CBGTPy: An extensible cortico-basal ganglia-thalamic framework for modeling biological decision making.bioRxiv : the preprint server for biology · 2024Article
- Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics.Cell reports · 2023Article
- Molecular Toxicity Virtual Screening Applying a Quantized Computational SNN-Based Framework.Molecules (Basel, Switzerland) · 2023Article
- Efficient parameter calibration and real-time simulation of large-scale spiking neural networks with GeNN and NEST.Frontiers in neuroinformatics · 2023Article
- Bringing Anatomical Information into Neuronal Network Models.Advances in experimental medicine and biology · 2022Article
- Multiscale modeling meets machine learning: What can we learn?Archives of computational methods in engineering : state of the art reviews · 2021Article
- SpikePropamine: Differentiable Plasticity in Spiking Neural Networks.Frontiers in neurorobotics · 2021Article
- Inferring and validating mechanistic models of neural microcircuits based on spike-train data.Nature communications · 2019Article
- Neural correlates of sparse coding and dimensionality reduction.PLoS computational biology · 2019Review
- Article
- Xolotl: An Intuitive and Approachable Neuron and Network Simulator for Research and Teaching.Frontiers in neuroinformatics · 2018Article
- ARACHNE: A neural-neuroglial network builder with remotely controlled parallel computing.PLoS computational biology · 2017Article
- BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience.Frontiers in neuroinformatics · 2016Article
- Improper activation of D1 and D2 receptors leads to excess noise in prefrontal cortex.Frontiers in computational neuroscience · 2015Article
- ANNarchy: a code generation approach to neural simulations on parallel hardware.Frontiers in neuroinformatics · 2015Article
- Learning touch preferences with a tactile robot using dopamine modulated STDP in a model of insular cortex.Frontiers in neurorobotics · 2015Article
- Research topic: neuromorphic engineering systems and applications. A snapshot of neuromorphic systems engineering.Frontiers in neuroscience · 2014Article
- Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.IBM journal of research and developmentArticle
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
As the desire for biologically realistic spiking neural networks (SNNs) increases, tuning the enormous number of open parameters in these models becomes a difficult challenge. SNNs have been used to successfully model complex neural circuits that explore various neural phenomena such as neural plasticity, vision systems, auditory systems, neural oscillations, and many other important topics of neural function. Additionally, SNNs are particularly well-adapted to run on neuromorphic hardware that will support biological brain-scale architectures. Although the inclusion of realistic plasticity equations, neural dynamics, and recurrent topologies has increased the descriptive power of SNNs, it has also made the task of tuning these biologically realistic SNNs difficult. To meet this challenge, we present an automated parameter tuning framework capable of tuning SNNs quickly and efficiently using evolutionary algorithms (EA) and inexpensive, readily accessible graphics processing units (GPUs). A sample SNN with 4104 neurons was tuned to give V1 simple cell-like tuning curve responses and produce self-organizing receptive fields (SORFs) when presented with a random sequence of counterphase sinusoidal grating stimuli. A performance analysis comparing the GPU-accelerated implementation to a single-threaded central processing unit (CPU) implementation was carried out and showed a speedup of 65× of the GPU implementation over the CPU implementation, or 0.35 h per generation for GPU vs. 23.5 h per generation for CPU. Additionally, the parameter value solutions found in the tuned SNN were studied and found to be stable and repeatable. The automated parameter tuning framework presented here will be of use to both the computational neuroscience and neuromorphic engineering communities, making the process of constructing and tuning large-scale SNNs much quicker and easier.
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