Evidence map›Paper›PMID 24550743›Full record

ArticlePLoS genetics2014

Sex-specific embryonic gene expression in species with newly evolved sex chromosomes.

Susan E Lott, Jacqueline E Villalta, Qi Zhou, Doris Bachtrog, Michael B Eisen

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Evidence for a Novel X Chromosome in Termites.Genome biology and evolution · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Evolved Differences inGenetics · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Susan E LottDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, United States of America.
Jacqueline E VillaltaHoward Hughes Medical Institute, University of California, Berkeley, Berkeley, California, United States of America.
Qi ZhouDepartment of Integrative Biology, University of California, Berkeley, Berkeley, California, United States of America.
Doris BachtrogDepartment of Integrative Biology, University of California, Berkeley, Berkeley, California, United States of America.
Michael B EisenDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, United States of America ; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, California, United States of America ; Department of Integrative Biology, University of California, Berkeley, Berkeley, California, United States of America.
University of California, Berkeley · USHoward Hughes Medical Institute · US

Funding

The evolution of dosage compensation in DrosophilaR01GM076007 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BACHTROG, DORIS · 2006 to 2020
$3.6M
"Gene Trafficking on an Evolving X Chromosome in Drosophila"R01GM093182 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BACHTROG, DORIS · 2010 to 2017
$2.7M
Understanding how developmental systems compensate for and are affected by changeR00GM098448 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LOTT, SUSAN E · 2012 to 2014
$713k
Understanding how developmental systems compensate for and are affected by changeK99GM098448 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI LOTT, SUSAN E · 2011 to 2011
$90k
NIGMS NIH HHS K99/R00-GM098448NIGMS NIH HHS R00 GM098448NIGMS NIH HHS R01 GM076007NIGMS NIH HHS R01GM076007NIGMS NIH HHS R01 GM093182NIGMS NIH HHS R01GM093182
6 · The paper itself

Abstract

Sex chromosome dosage differences between females and males are a significant form of natural genetic variation in many species. Like many species with chromosomal sex determination, Drosophila females have two X chromosomes, while males have one X and one Y. Fusions of sex chromosomes with autosomes have occurred along the lineage leading to D. pseudoobscura and D. miranda. The resulting neo-sex chromosomes are gradually evolving the properties of sex chromosomes, and neo-X chromosomes are becoming targets for the molecular mechanisms that compensate for differences in X chromosome dose between sexes. We have previously shown that D. melanogaster possess at least two dosage compensation mechanisms: the well- characterized MSL-mediated dosage compensation active in most somatic tissues, and another system active during early embryogenesis prior to the onset of MSL-mediated dosage compensation. To better understand the developmental constraints on sex chromosome gene expression and evolution, we sequenced mRNA from individual male and female embryos of D. pseudoobscura and D. miranda, from ∼0.5 to 8 hours of development. Autosomal expression levels are highly conserved between these species. But, unlike D. melanogaster, we observe a general lack of dosage compensation in D. pseudoobscura and D. miranda prior to the onset of MSL-mediated dosage compensation. Thus, either there has been a lineage-specific gain or loss in early dosage compensation mechanism(s) or increasing X chromosome dose may strain dosage compensation systems and make them less effective. The extent of female bias on the X chromosomes decreases through developmental time with the establishment of MSL-mediated dosage compensation, but may do so more slowly in D. miranda than D. pseudoobscura. These results also prompt a number of questions about whether species with more sex-linked genes have more sex-specific phenotypes, and how much transcript level variance is tolerable during critical stages of development.

Indexed as

Evolution, MolecularSex CharacteristicsSex Determination ProcessesAnimalsDosage Compensation, GeneticDrosophila melanogasterFemaleGene Expression Regulation, DevelopmentalHumansMaleSex ChromosomesSpecies Specificity

Identifiers

PMID24550743
PMCPMC3923672
OpenAlexW2042736121

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.