Evidence map›Paper›PMID 24550505›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Dynamic look at DNA unwinding by a replicative helicase.

Seung-Jae Lee, Salman Syed, Eric J Enemark, Stephen Schuck, Arne Stenlund, Taekjip Ha, Leemor Joshua-Tor

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. CMG helicase can use ATPγS to unwind DNA: Implications for the rate-limiting step in the reaction mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Mechanisms of hexameric helicases.Critical reviews in biochemistry and molecular biology · 2021
    Review
  12. Article
  13. Article
  14. DNA replication machinery: Insights fromComputational and structural biotechnology journal · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Seung-Jae LeeW. M. Keck Structural Biology Laboratory, Howard Hughes Medical Institute, and Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Salman Syed
Eric J Enemark
Stephen Schuck
Arne Stenlund
Taekjip Ha
Leemor Joshua-Tor

Funding

Single Molecule Study of Helicase MechanismsR01GM065367 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI HA, TAEKJIP · 2002 to 2014
$3.6M
Biochemical analysis of papillomavirus replicationR01AI072345 · NIAID · COLD SPRING HARBOR LABORATORY · PI STENLUND, ARNE · 2008 to 2011
$1.5M
Intra-molecular interactions control papillomavirus E1 function.R56AI072345 · NIAID · COLD SPRING HARBOR LABORATORY · PI STENLUND, ARNE · 2007 to 2012
$889k
Howard Hughes Medical InstituteNIAID NIH HHS AI072345NIAID NIH HHS R01 AI072345NIAID NIH HHS R56 AI072345NIGMS NIH HHS GM065367NIGMS NIH HHS R01 GM065367
6 · The paper itself

Abstract

A prerequisite for DNA replication is the unwinding of duplex DNA catalyzed by a replicative hexameric helicase. Despite a growing body of research, key elements of helicase mechanism remain under substantial debate. In particular, the number of DNA strands encircled by the helicase ring during unwinding and the ring orientation at the replication fork completely contrast in contemporary mechanistic models. Here we use single-molecule and ensemble assays to address these questions for the papillomavirus E1 helicase. We find that E1 unwinds DNA with a strand-exclusion mechanism, with the N-terminal side of the helicase ring facing the replication fork. We show that E1 generates strikingly heterogeneous unwinding patterns stemming from varying degrees of repetitive movements, which is modulated by the DNA-binding domain. Together, our studies reveal previously unrecognized dynamic facets of replicative helicase unwinding mechanisms.

Indexed as

Models, MolecularNucleic Acid ConformationBase SequenceDNADNA-Binding ProteinsDNA HelicasesFluorescence Resonance Energy TransferModels, BiologicalMolecular Sequence DataMutagenesis, Site-DirectedSpectrometry, FluorescenceViral ProteinsDNADNA-Binding ProteinsDNA HelicasesE1 protein, Bovine papillomavirusViral ProteinsATPasemolecular motors

Identifiers

PMID24550505
PMCPMC3948270

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.