Evidence map›Paper›PMID 24550447›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

OGFOD1 catalyzes prolyl hydroxylation of RPS23 and is involved in translation control and stress granule formation.

Rachelle S Singleton, Phebee Liu-Yi, Fabio Formenti, Wei Ge, Rok Sekirnik, Roman Fischer, Julie Adam, Patrick J Pollard, Alexander Wolf, Armin Thalhammer and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 116 citations in OpenAlex.

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  7. Built differently or defective: can RNA exosomopathies cause ribosome heterogeneity?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
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  8. Why cells need iron: a compendium of iron utilisation.Trends in endocrinology and metabolism: TEM · 2024
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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 3 countries.

Rachelle S SingletonCentre for Cellular and Molecular Physiology, University of Oxford, Oxford OX3 7BN, United Kingdom.
Phebee Liu-Yi
Fabio Formenti
Wei Ge
Rok Sekirnik
Roman Fischer
Julie Adam
Patrick J Pollard
Alexander Wolf
Armin Thalhammer
Christoph Loenarz
Emily Flashman
Atsushi Yamamoto
Mathew L Coleman
Benedikt M Kessler
Pablo Wappner
Christopher J Schofield
Peter J Ratcliffe
Matthew E Cockman
University of Oxford · GBFundación Instituto Leloir · ARPeking University · CN

Funding

Biotechnology and Biological Sciences Research CouncilBritish Heart Foundation PG/12/33/29546Cancer Research UK 18245Medical Research Council MR/K010816/1Wellcome Trust
6 · The paper itself

Abstract

2-Oxoglutarate (2OG) and Fe(II)-dependent oxygenase domain-containing protein 1 (OGFOD1) is predicted to be a conserved 2OG oxygenase, the catalytic domain of which is related to hypoxia-inducible factor prolyl hydroxylases. OGFOD1 homologs in yeast are implicated in diverse cellular functions ranging from oxygen-dependent regulation of sterol response genes (Ofd1, Schizosaccharomyces pombe) to translation termination/mRNA polyadenylation (Tpa1p, Saccharomyces cerevisiae). However, neither the biochemical activity of OGFOD1 nor the identity of its substrate has been defined. Here we show that OGFOD1 is a prolyl hydroxylase that catalyzes the posttranslational hydroxylation of a highly conserved residue (Pro-62) in the small ribosomal protein S23 (RPS23). Unusually OGFOD1 retained a high affinity for, and forms a stable complex with, the hydroxylated RPS23 substrate. Knockdown or inactivation of OGFOD1 caused a cell type-dependent induction of stress granules, translational arrest, and growth impairment in a manner complemented by wild-type but not inactive OGFOD1. The work identifies a human prolyl hydroxylase with a role in translational regulation.

Indexed as

Analysis of VarianceCarrier ProteinsComputational BiologyFluorescent Antibody TechniqueGene Knockdown TechniquesHumansHydroxylationImmunoblottingImmunoprecipitationKetoglutaric AcidsLuciferasesNuclear ProteinsProlineProlyl HydroxylasesProtein BiosynthesisProtein Processing, Post-TranslationalCarrier ProteinsKetoglutaric AcidsLuciferasesNuclear ProteinsOGFOD1 protein, humanProlineProlyl HydroxylasesRibosomal ProteinsRPS23 protein, human2-oxoglutarate oxygenasehypoxiaribosometranslational control

Identifiers

PMID24550447
PMCPMC3964040
OpenAlexW2091671707

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.