Evidence map›Paper›PMID 24550386›Full record

ArticleThe Journal of biological chemistry2014

Identification of multiple phosphorylation sites on maize endosperm starch branching enzyme IIb, a key enzyme in amylopectin biosynthesis.

Amina Makhmoudova, Declan Williams, Dyanne Brewer, Sarah Massey, Jenelle Patterson, Anjali Silva, Kenrick A Vassall, Fushan Liu, Sanjeena Subedi, George Harauz and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Starch Biosynthetic Protein Complex Formation in RiceJournal of applied glycoscience · 2022
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. The Proteomic Analysis of Maize Endosperm Protein Enriched by Phos-tagInternational journal of molecular sciences · 2019
    Article
  13. Crop resistant starch and genetic improvement: a review of recent advances.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Review
  14. Article
  15. Bioinformatic andFrontiers in plant science · 2018
    Article
  16. Review
  17. Article
  18. Article
  19. Formation of starch in plant cells.Cellular and molecular life sciences : CMLS · 2016
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Amina MakhmoudovaFrom the Department of Molecular and Cellular Biology, College of Biological Science.
Declan Williams
Dyanne Brewer
Sarah Massey
Jenelle Patterson
Anjali Silva
Kenrick A Vassall
Fushan Liu
Sanjeena Subedi
George Harauz
K W Michael Siu
Ian J Tetlow
Michael J Emes
University of Guelph · CAYork University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Starch branching enzyme IIb (SBEIIb) plays a crucial role in amylopectin biosynthesis in maize endosperm by defining the structural and functional properties of storage starch and is regulated by protein phosphorylation. Native and recombinant maize SBEIIb were used as substrates for amyloplast protein kinases to identify phosphorylation sites on the protein. A multidisciplinary approach involving bioinformatics, site-directed mutagenesis, and mass spectrometry identified three phosphorylation sites at Ser residues: Ser(649), Ser(286), and Ser(297). Two Ca(2+)-dependent protein kinase activities were partially purified from amyloplasts, termed K1, responsible for Ser(649) and Ser(286) phosphorylation, and K2, responsible for Ser(649) and Ser(297) phosphorylation. The Ser(286) and Ser(297) phosphorylation sites are conserved in all plant branching enzymes and are located at opposite openings of the 8-stranded parallel β-barrel of the active site, which is involved with substrate binding and catalysis. Molecular dynamics simulation analysis indicates that phospho-Ser(297) forms a stable salt bridge with Arg(665), part of a conserved Cys-containing domain in plant branching enzymes. Ser(649) conservation appears confined to the enzyme in cereals and is not universal, and is presumably associated with functions specific to seed storage. The implications of SBEIIb phosphorylation are considered in terms of the role of the enzyme and the importance of starch biosynthesis for yield and biotechnological application.

Indexed as

1,4-alpha-Glucan Branching EnzymeAmino Acid SequenceAmylopectinBinding SitesCalciumEndospermEnzyme InhibitorsMolecular Dynamics SimulationMolecular Sequence DataMutagenesis, Site-DirectedPeptidesPhosphorylationProtein ConformationProtein KinasesRecombinant ProteinsZea mays1,4-alpha-Glucan Branching EnzymeAmylopectinCalciumEnzyme InhibitorsPeptidesProtein KinasesRecombinant ProteinsBranching EnzymeCarbohydrate BiosynthesisMaizeMolecular ModelingPlant BiochemistryProtein KinasesProtein PhosphorylationStarch

Identifiers

PMID24550386
PMCPMC3979418
OpenAlexW2121296843

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.