Evidence map›Paper›PMID 24550223›Full record

ArticleThe Plant cell2014

The bHLH transcription factor HBI1 mediates the trade-off between growth and pathogen-associated molecular pattern-triggered immunity in Arabidopsis.

Min Fan, Ming-Yi Bai, Jung-Gun Kim, Tina Wang, Eunkyoo Oh, Lawrence Chen, Chan Ho Park, Seung-Hyun Son, Seong-Ki Kim, Mary Beth Mudgett and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
30.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 250 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Article
  7. Frontiers in plant science · 2025
    Article
  8. Review
  9. Article
  10. Evolutionary trajectory of transcription factors and selection of targets for metabolic engineering.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  11. Article
  12. Article
  13. MENTOR: Multiplex Embedding of Networks for Team-Based Omics Research.bioRxiv : the preprint server for biology · 2024
    Article
  14. Article
  15. Overexpression ofPlants (Basel, Switzerland) · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Transcription FactorInternational journal of molecular sciences · 2023
    Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Min FanDepartment of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305.
Ming-Yi Bai
Jung-Gun Kim
Tina Wang
Eunkyoo Oh
Lawrence Chen
Chan Ho Park
Seung-Hyun Son
Seong-Ki Kim
Mary Beth Mudgett
Zhi-Yong Wang
Department of Plant Biology · USChung-Ang University · KRPalo Alto University · USStanford University · USCarnegie Institution for Science · USShandong University · CN

Funding

Genetic Biochemical Studies of Signaling in Growth and AcclimationR01GM066258 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI ZHIYONG WANG · 2002 to 2026
$10.5M
Dissection of AvrBsT-BST defense pathway in ArabidopsisR01GM068886 · NIGMS · STANFORD UNIVERSITY · PI MUDGETT, MARY BETH · 2004 to 2013
$2.6M
NIGMS NIH HHS 2R01GM068886-06A1NIGMS NIH HHS R01 GM066258NIGMS NIH HHS R01GM066258NIGMS NIH HHS R01 GM068886
6 · The paper itself

Abstract

The trade-off between growth and immunity is crucial for survival in plants. However, the mechanism underlying growth-immunity balance has remained elusive. The PRE-IBH1-HBI1 tripartite helix-loop-helix/basic helix-loop-helix module is part of a central transcription network that mediates growth regulation by several hormonal and environmental signals. Here, genome-wide analyses of HBI1 target genes show that HBI1 regulates both overlapping and unique targets compared with other DNA binding components of the network in Arabidopsis thaliana, supporting a role in specifying network outputs and fine-tuning feedback regulation. Furthermore, HBI1 negatively regulates a subset of genes involved in immunity, and pathogen-associated molecular pattern (PAMP) signals repress HBI1 transcription. Constitutive overexpression and loss-of-function experiments show that HBI1 inhibits PAMP-induced growth arrest, defense gene expression, reactive oxygen species production, and resistance to pathogen. These results show that HBI1, as a component of the central growth regulation circuit, functions as a major node of crosstalk that mediates a trade-off between growth and immunity in plants.

Indexed as

Plant ImmunityArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsBrassinosteroidsFlagellinGene Expression Regulation, PlantGenes, PlantModels, BiologicalProtein BindingReceptors, Pattern RecognitionSignal TransductionArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsBrassinosteroidsFlagellinHBI1 protein, ArabidopsisReceptors, Pattern Recognition

Identifiers

PMID24550223
PMCPMC3967043
OpenAlexW2120746999

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.