Evidence map›Paper›PMID 24550119›Full record

ArticleDevelopment (Cambridge, England)2014

Trithorax monomethylates histone H3K4 and interacts directly with CBP to promote H3K27 acetylation and antagonize Polycomb silencing.

Feng Tie, Rakhee Banerjee, Alina R Saiakhova, Benny Howard, Kelsey E Monteith, Peter C Scacheri, Michael S Cosgrove, Peter J Harte

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. The RPD3L deacetylation complex is required for facultative heterochromatin repression inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Polycomb Recruiters Inside and Outside of the Repressed Domains.International journal of molecular sciences · 2023
    Review
  16. Review
  17. Article
  18. Review
  19. Review
  20. TRITHORAX-dependent arginine methylation of HSP68 mediates circadian repression by PERIOD in the monarch butterfly.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Feng TieDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH 44106, USA.
Rakhee Banerjee
Alina R Saiakhova
Benny Howard
Kelsey E Monteith
Peter C Scacheri
Michael S Cosgrove
Peter J Harte
Case Western Reserve University · USSUNY Upstate Medical University · US

Funding

MOLECULAR BASIS OF HOMEOTIC GENE REGULATIONR01GM039255 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HARTE, PETER J. · 1988 to 2020
$7.1M
Molecular Mechanisms for the Assembly and Regulation of the MLL1 Core ComplexR01CA140522 · NCI · UPSTATE MEDICAL UNIVERSITY · PI COSGROVE, MICHAEL S. · 2010 to 2019
$3.6M
The role of gene enhancer elements in colon cancerR01CA160356 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI TESAR, PAUL JOSEPH · 2012 to 2023
$3.6M
LEICA AOBS CONFOCAL FOR USE IN MULTI-USER FACILITY: REPRODUCTIVE BIOLOGYS10RR017980 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI CONRAD, PATRICIA A · 2004 to 2004
$492k
CYTO VISION WORKSTATION FOR USE IN MULTI-USER FACILITY: CYSTIC FIBROSISS10RR021228 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI CONRAD, PATRICIA A · 2005 to 2005
$178k
Typhoon Trio Variable Mode Imager For Use In Multi-User FacilityS10RR024536 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI CONRAD, PATRICIA A · 2008 to 2008
$123k
NCI NIH HHS R01 CA140522NCI NIH HHS R01CA140522NCI NIH HHS R01 CA160356NCI NIH HHS R01CA160356NCRR NIH HHS RR-017980-01NCRR NIH HHS RR-021228-01NCRR NIH HHS RR-024536-01NCRR NIH HHS S10 RR017980NCRR NIH HHS S10 RR021228NCRR NIH HHS S10 RR024536NIGMS NIH HHS R01 GM039255NIGMS NIH HHS R01GM39255
6 · The paper itself

Abstract

Trithorax (TRX) antagonizes epigenetic silencing by Polycomb group (PcG) proteins, stimulates enhancer-dependent transcription, and establishes a 'cellular memory' of active transcription of PcG-regulated genes. The mechanisms underlying these TRX functions remain largely unknown, but are presumed to involve its histone H3K4 methyltransferase activity. We report that the SET domains of TRX and TRX-related (TRR) have robust histone H3K4 monomethyltransferase activity in vitro and that Tyr3701 of TRX and Tyr2404 of TRR prevent them from being trimethyltransferases. The trx(Z11) missense mutation (G3601S), which abolishes H3K4 methyltransferase activity in vitro, reduces the H3K4me1 but not the H3K4me3 level in vivo. trx(Z11) also suppresses the impaired silencing phenotypes of the Pc(3) mutant, suggesting that H3K4me1 is involved in antagonizing Polycomb silencing. Polycomb silencing is also antagonized by TRX-dependent H3K27 acetylation by CREB-binding protein (CBP). We show that perturbation of Polycomb silencing by TRX overexpression requires CBP. We also show that TRX and TRR are each physically associated with CBP in vivo, that TRX binds directly to the CBP KIX domain, and that the chromatin binding patterns of TRX and TRR are highly correlated with CBP and H3K4me1 genome-wide. In vitro acetylation of H3K27 by CBP is enhanced on K4me1-containing H3 substrates, and independently altering the H3K4me1 level in vivo, via the H3K4 demethylase LSD1, produces concordant changes in H3K27ac. These data indicate that the catalytic activities of TRX and CBP are physically coupled and suggest that both activities play roles in antagonizing Polycomb silencing, stimulating enhancer activity and cellular memory.

Indexed as

AcetylationAnimalsChromosomal Proteins, Non-HistoneDrosophila ProteinsGene Expression Regulation, DevelopmentalGene SilencingHistonesMethylationPolycomb Repressive Complex 1Protein BindingChromosomal Proteins, Non-HistoneDrosophila ProteinsHistonesPc protein, DrosophilaPolycomb Repressive Complex 1trx protein, DrosophilaCBPDrosophilaH3K4 monomethylationTrithorax

Identifiers

PMID24550119
PMCPMC3929413
OpenAlexW2096149923

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.