Evidence map›Paper›PMID 24549883›Full record

ArticlePlant molecular biology2014

Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors.

Megan E Andriankaja, Selahattin Danisman, Lorin F Mignolet-Spruyt, Hannes Claeys, Irina Kochanke, Mattias Vermeersch, Liesbeth De Milde, Stefanie De Bodt, Veronique Storme, Aleksandra Skirycz and 7 more

Abstract read
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In one paragraph

Article in Plant molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Effect of thermospermine on expression profiling of different gene using massive analysis of cDNA ends (MACE) and vascular maintenance in Arabidopsis.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  6. Review
  7. Article
  8. Article
  9. Transcription Factor Networks in Leaves ofPlants (Basel, Switzerland) · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Frontiers in plant science · 2017
    Article
  17. Mapping and Characterization of theFrontiers in plant science · 2017
    Article
  18. Molecular and Functional Characterization of WheatFrontiers in plant science · 2017
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 5 countries.

Megan E AndriankajaDepartment of Plant Systems Biology, VIB, Technologiepark 927, 9052, Ghent, Belgium.
Selahattin Danisman
Lorin F Mignolet-Spruyt
Hannes Claeys
Irina Kochanke
Mattias Vermeersch
Liesbeth De Milde
Stefanie De Bodt
Veronique Storme
Aleksandra Skirycz
Felix Maurer
Petra Bauer
Per Mühlenbock
Frank Van Breusegem
Gerco C Angenent
Richard G H Immink
Dirk Inzé
Ghent University · BEGhent University Hospital · BEVIB-UGent Center for Plant Systems Biology · BEBielefeld University · DESaarland University · DECentre for BioSystems Genomics · NLWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The establishment of the photosynthetic apparatus during chloroplast development creates a high demand for iron as a redox metal. However, iron in too high quantities becomes toxic to the plant, thus plants have evolved a complex network of iron uptake and regulation mechanisms. Here, we examined whether four of the subgroup Ib basic helix-loop-helix transcription factors (bHLH38, bHLH39, bHLH100, bHLH101), previously implicated in iron homeostasis in roots, also play a role in regulating iron metabolism in developing leaves. These transcription factor genes were strongly up-regulated during the transition from cell proliferation to expansion, and thus sink-source transition, in young developing leaves of Arabidopsis thaliana. The four subgroup Ib bHLH genes also showed reduced expression levels in developing leaves of plants treated with norflurazon, indicating their expression was tightly linked to the onset of photosynthetic activity in young leaves. In addition, we provide evidence for a mechanism whereby the transcriptional regulators SAC51 and TCP20 antagonistically regulate the expression of these four subgroup Ib bHLH genes. A loss-of-function mutant analysis also revealed that single mutants of bHLH38, bHLH39, bHLH100, and bHLH101 developed smaller rosettes than wild-type plants in soil. When grown in agar plates with reduced iron concentration, triple bhlh39 bhlh100 bhlh101 mutant plants were smaller than wild-type plants. However, measurements of the iron content in single and multiple subgroup Ib bHLH genes, as well as transcript profiling of iron response genes during early leaf development, do not support a role for bHLH38, bHLH39, bHLH100, and bHLH101 in iron homeostasis during early leaf development.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCell DifferentiationCell LineChloroplastsGene Expression Regulation, PlantHerbicidesIronNicotianaPhotosystem II Protein ComplexPlant LeavesPyridazinesTranscription FactorsTranscriptomeArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsHerbicidesIronnorflurazonePhotosystem II Protein ComplexPyridazinesTCP20 protein, ArabidopsisTranscription Factors

Identifiers

PMID24549883
OpenAlexW2021388499

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.