Evidence map›Paper›PMID 24548133›Full record

ArticleJournal of the American Chemical Society2014

Detection of late intermediates in virus capsid assembly by charge detection mass spectrometry.

Elizabeth E Pierson, David Z Keifer, Lisa Selzer, Lye Siang Lee, Nathan C Contino, Joseph C-Y Wang, Adam Zlotnick, Martin F Jarrold

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed.

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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Elizabeth E PiersonDepartment of Chemistry and Department of Molecular and Cellular Biochemistry, Indiana University , Bloomington, Indiana 47405, United States.
David Z Keifer
Lisa Selzer
Lye Siang Lee
Nathan C Contino
Joseph C-Y Wang
Adam Zlotnick
Martin F Jarrold

Funding

The Biophysics of Virus Capsid AssemblyR01AI077688 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI ZLOTNICK, ADAM · 2009 to 2013
$1.5M
Nanofluidic Devices for Studying Assembly of Single Virus ParticlesR01GM100071 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI JACOBSON, STEPHEN C · 2012 to 2015
$1.2M
NIAID NIH HHS R01 AI077688NIAID NIH HHS R01-AI077688NIGMS NIH HHS 5R01-GM100071NIGMS NIH HHS R01 GM100071
6 · The paper itself

Abstract

The assembly of hundreds of identical proteins into an icosahedral virus capsid is a remarkable feat of molecular engineering. How this occurs is poorly understood. Key intermediates have been anticipated at the end of the assembly reaction, but it has not been possible to detect them. In this work we have used charge detection mass spectrometry to identify trapped intermediates from late in the assembly of the hepatitis B virus T = 4 capsid, a complex of 120 protein dimers. Prominent intermediates are found with 104/105, 110/111, and 117/118 dimers. Cryo-EM observations indicate the intermediates are incomplete capsids and, hence, on the assembly pathway. On the basis of their stability and kinetic accessibility we have proposed plausible structures. The prominent trapped intermediate with 104 dimers is attributed to an icosahedron missing two neighboring facets, the 111-dimer species is assigned to an icosahedron missing a single facet, and the intermediate with 117 dimers is assigned to a capsid missing a ring of three dimers in the center of a facet.

Indexed as

Mass SpectrometryVirus AssemblyCapsidHepatitis B virusModels, MolecularProtein Conformation

Identifiers

PMID24548133
PMCPMC3985884

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.