Evidence map›Paper›PMID 24536034›Full record

ArticleMuscle & nerve2014

Systems analysis of transcriptional data provides insights into muscle's biological response to botulinum toxin.

Kavitha Mukund, Margie Mathewson, Viviane Minamoto, Samuel R Ward, Shankar Subramaniam, Richard L Lieber

Open access · greenAbstract read
In one paragraph

Article in Muscle & nerve, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Skeletal muscle: A review of molecular structure and function, in health and disease.Wiley interdisciplinary reviews. Systems biology and medicine · 2020
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Kavitha MukundBioinformatics and System Biology Graduate Program, University of California San Diego, La Jolla, California, USA.
Margie Mathewson
Viviane Minamoto
Samuel R Ward
Shankar Subramaniam
Richard L Lieber
University of California, San Diego · USLa Jolla Bioengineering Institute · USVA San Diego Healthcare System · US

Funding

Systems Biology Analyses for Hemodynamic Regulation of Vascular HomeostasisR01HL108735 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, SHYY, JOHN YJ · 2012 to 2024
$13.4M
Shear Regulation of MicroRNA Transportomes and Targetomes in Vascular HomeostasisR01HL106579 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, SHYY, JOHN YJ · 2011 to 2022
$8.3M
National Center for Muscle Rehabilitation ResearchR24HD050837 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LIEBER, RICHARD L., WARD, SAMUEL RICHARD · 2005 to 2014
$7.2M
Muscle Structure, Toxin Dose, and Exercise Affect Botulinum Toxin EfficiencyR01AR057013 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WARD, SAMUEL RICHARD · 2009 to 2013
$1.5M
Reconstruction and Modeling of Networks Involved in Cardiomyoctye DifferentiationR33HL087375 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2007 to 2009
$1.1M
Mechanical Basis for Tensioning Tendon TransfersI01RX000670 · VA · VA SAN DIEGO HEALTHCARE SYSTEM · PI LIEBER, RICHARD L. · 2012 to 2016
–
NHLBI NIH HHS HL087375-02NHLBI NIH HHS HL106579NHLBI NIH HHS HL108735NHLBI NIH HHS R01 HL106579NHLBI NIH HHS R01 HL108735NHLBI NIH HHS R33 HL087375NIAMS NIH HHS AR057013NIAMS NIH HHS R01 AR057013NICHD NIH HHS R24 HD050837NICHD NIH HHS R24HD050837RRD VA I01 RX000670
6 · The paper itself

Abstract

introductionThis study provides global transcriptomic profiling and analysis of botulinum toxin A (BoNT-A)-treated muscle over a 1-year period.

methodsMicroarray analysis was performed on rat tibialis anterior muscles from 4 groups (n = 4/group) at 1, 4, 12, and 52 weeks after BoNT-A injection compared with saline-injected rats at 12 weeks.

resultsDramatic transcriptional adaptation occurred at 1 week with a paradoxical increase in expression of slow and immature isoforms, activation of genes in competing pathways of repair and atrophy, impaired mitochondrial biogenesis, and increased metal ion imbalance. Adaptations of the basal lamina and fibrillar extracellular matrix (ECM) occurred by 4 weeks. The muscle transcriptome returned to its unperturbed state 12 weeks after injection.

conclusionsAcute transcriptional adaptations resemble denervated muscle with some subtle differences, but resolved more quickly compared with denervation. Overall, gene expression across time correlates with the generally accepted BoNT-A time course and suggests that the direct action of BoNT-A in skeletal muscle is relatively rapid.

Indexed as

Acetylcholine Release InhibitorsAdaptation, PhysiologicalAnimalsBotulinum Toxins, Type AExtracellular MatrixGene Expression ProfilingMaleMitochondrial TurnoverMuscle ContractionMuscle, SkeletalMuscular AtrophyNeuromuscular JunctionOligonucleotide Array Sequence AnalysisOxidative StressRatsRats, Sprague-DawleyAcetylcholine Release InhibitorsBotulinum Toxins, Type Abotulinum toxin Across-sectional studymicroarray gene expressionneurotoxinskeletal muscletime course

Identifiers

PMID24536034
PMCPMC4136975
OpenAlexW1820521028

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.