Evidence map›Paper›PMID 24535833›Full record

ArticleInternational journal of cancer2014

Inherited variation in the PARP1 gene and survival from melanoma.

John R Davies, Rosalyn Jewell, Paul Affleck, Gabriella M Anic, Juliette Randerson-Moor, Aija Ozola, Kathleen M Egan, Faye Elliott, Zaida García-Casado, Johan Hansson and 27 more

Open access · hybridAbstract read
In one paragraph

Article in International journal of cancer, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. MX 2 is a novel regulator of cell cycle in melanoma cells.Pigment cell & melanoma research · 2020
    Article
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  13. The Expression Quantitative Trait Loci in Immune Pathways and their Effect on Cutaneous Melanoma Prognosis.Clinical cancer research : an official journal of the American Association for Cancer Research · 2016
    Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 16 institutions in 10 countries.

John R DaviesSection of Epidemiology and Biostatistics, Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, United Kingdom.
Rosalyn Jewell
Paul Affleck
Gabriella M Anic
Juliette Randerson-Moor
Aija Ozola
Kathleen M Egan
Faye Elliott
Zaida García-Casado
Johan Hansson
Mark Harland
Veronica Höiom
Guan Jian
Göran Jönsson
Rajiv Kumar
Eduardo Nagore
Judith Wendt
Håkan Olsson
Jong Y Park
Poulam Patel
Dace Pjanova
Susana Puig
Dirk Schadendorf
P Sivaramakrishna Rachakonda
Helen Snowden
Alexander J Stratigos
Dimitrios Bafaloukos
Zighereda Ogbah
Antje Sucker
Joost J Van den Oord
Remco Van Doorn
Christy Walker
Ichiro Okamoto
Pascal Wolter
Jennifer H Barrett
D Timothy Bishop
Julia Newton-Bishop
University of Leeds · GBMoffitt Cancer Center · USAndreas Sygros Hospital · GREssen University Hospital · DEFundación Instituto Valenciano de Oncología · ESHeidelberg University · DEKarolinska Institutet · SEKU Leuven · BELatvian Biomedical Research and Study Centre · LVLund University · SEMedical University of Vienna · ATCentre for Biomedical Network Research on Rare Diseases · ESConsorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESGerman Cancer Research Center · DELeiden University Medical Center · NLUniversity of Nottingham · GB

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI KENNETH Lynn WRIGHT · 1998 to 2026
$93.5M
Genetic Epidermiology of MelanomaR01CA083115 · NCI · UNIVERSITY OF PENNSYLVANIA · PI BISHOP, DAVID TIMOTHY, ELDER, DAVID ERIC · 2001 to 2017
$13.0M
Moffitt Postdoctoral Training Program in Molecular & Genetic EpidemiologyR25CA147832 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI EGAN, KATHLEEN M. · 2010 to 2014
$2.0M
Cancer Research UK 10589Cancer Research UK C37059/A11941Cancer Research UK C588/A10589Cancer Research UK C588/A4994Cancer Research UK C8216/A6129Medical Research Council G0802123NCI NIH HHS CA83115NCI NIH HHS P30 CA076292NCI NIH HHS R01 CA083115NCI NIH HHS R01 CA83115NCI NIH HHS R25 CA147832
6 · The paper itself

Abstract

We report the association of an inherited variant located upstream of the poly(adenosine diphosphate-ribose) polymerase 1 (PARP1) gene (rs2249844), with survival in 11 BioGenoMEL melanoma cohorts. The gene encodes a protein involved in a number of cellular processes including single-strand DNA repair. Survival analysis was conducted for each cohort using proportional hazards regression adjusting for factors known to be associated with survival. Survival was measured as overall survival (OS) and, where available, melanoma-specific survival (MSS). Results were combined using random effects meta-analysis. Evidence for a role of the PARP1 protein in melanoma ulceration and survival was investigated by testing gene expression levels taken from formalin-fixed paraffin-embedded tumors. A significant association was seen for inheritance of the rarer variant of PARP1, rs2249844 with OS (hazard ratio (HR) = 1.16 per allele, 95% confidence interval (CI) 1.04-1.28, p = 0.005, eleven cohorts) and MSS (HR = 1.20 per allele, 95% CI 1.01-1.39, p = 0.03, eight cohorts). We report bioinformatic data supportive of a functional effect for rs2249844. Higher levels of PARP1 gene expression in tumors were shown to be associated with tumor ulceration and poorer OS.

Indexed as

Genetic Predisposition to DiseaseQuantitative Trait LociDNA, NeoplasmFollow-Up StudiesHumansMelanomaPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesPolymerase Chain ReactionPolymorphism, Single NucleotidePrognosisRetrospective StudiesSurvival RateDNA, NeoplasmPARP1 protein, humanPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) Polymerasesbioinformaticsgenetic determinants of survivalmelanomaPARP1random effects meta-analysissurvival

Identifiers

PMID24535833
PMCPMC4106984
OpenAlexW1714372147

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.