Evidence map›Paper›PMID 24535825›Full record

ArticleThe Journal of cell biology2014

Peroxisomal Atg37 binds Atg30 or palmitoyl-CoA to regulate phagophore formation during pexophagy.

Taras Y Nazarko, Katharine Ozeki, Andreas Till, Geetha Ramakrishnan, Pouya Lotfi, Mingda Yan, Suresh Subramani

Abstract readComparative Study
In one paragraph

Article in The Journal of cell biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Guideline
  2. Pooled it
  3. Guideline
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Fluorescence Methods to Measure Pexophagy.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Cells · 2022
    Article
  17. Review
  18. Review
  19. Review
  20. Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Taras Y NazarkoSection of Molecular Biology, Division of Biological Sciences, and 2 San Diego Center for Systems Biology, University of California, San Diego, La Jolla, CA 92093.
Katharine Ozeki
Andreas Till
Geetha Ramakrishnan
Pouya Lotfi
Mingda Yan
Suresh Subramani

Funding

SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLASS, CHRISTOPHER K · 2010 to 2018
$23.3M
Mechanisms Involved in PexophagyR01GM069373 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANI, SURESH · 2006 to 2013
$2.3M
The role of acyl-CoA binding proteins in selective autophagyK01DK094843 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NAZARKO, TARAS Y. · 2012 to 2014
$348k
NIDDK NIH HHS DK094843NIDDK NIH HHS K01 DK094843NIGMS NIH HHS GM069373NIGMS NIH HHS GM085764NIGMS NIH HHS P50 GM085764NIGMS NIH HHS R01 GM069373
6 · The paper itself

Abstract

Autophagy is a membrane trafficking pathway that sequesters proteins and organelles into autophagosomes. The selectivity of this pathway is determined by autophagy receptors, such as the Pichia pastoris autophagy-related protein 30 (Atg30), which controls the selective autophagy of peroxisomes (pexophagy) through the assembly of a receptor protein complex (RPC). However, how the pexophagic RPC is regulated for efficient formation of the phagophore, an isolation membrane that sequesters the peroxisome from the cytosol, is unknown. Here we describe a new, conserved acyl-CoA-binding protein, Atg37, that is an integral peroxisomal membrane protein required specifically for pexophagy at the stage of phagophore formation. Atg30 recruits Atg37 to the pexophagic RPC, where Atg37 regulates the recruitment of the scaffold protein, Atg11. Palmitoyl-CoA competes with Atg30 for Atg37 binding. The human orthologue of Atg37, acyl-CoA-binding domain containing protein 5 (ACBD5), is also peroxisomal and is required specifically for pexophagy. We suggest that Atg37/ACBD5 is a new component and positive regulator of the pexophagic RPC.

Indexed as

AutophagyAdaptor Proteins, Signal TransducingFungal ProteinsHeLa CellsHumansHuntingtin ProteinImage Processing, Computer-AssistedImmunoprecipitationMembrane ProteinsMicroscopy, FluorescenceMutationNerve Tissue ProteinsPalmitoyl Coenzyme APeroxisomesPhagosomesPichiaACBD5 protein, humanAdaptor Proteins, Signal TransducingFungal ProteinsHTT protein, humanHuntingtin ProteinMembrane ProteinsNerve Tissue ProteinsPalmitoyl Coenzyme ASequestosome-1 ProteinSQSTM1 protein, human

Identifiers

PMID24535825
PMCPMC3926955

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.