Evidence map›Paper›PMID 24534730›Full record

ArticleJournal of molecular biology2014

Mitochondrial DNA variant in COX1 subunit significantly alters energy metabolism of geographically divergent wild isolates in Caenorhabditis elegans.

Stephen D Dingley, Erzsebet Polyak, Julian Ostrovsky, Satish Srinivasan, Icksoo Lee, Amy B Rosenfeld, Mai Tsukikawa, Rui Xiao, Mary A Selak, Joshua J Coon and 9 more

Abstract read
In one paragraph

Article in Journal of molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 2 countries.

Stephen D DingleyDivision of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia and University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Erzsebet PolyakDivision of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia and University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Julian OstrovskyDivision of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia and University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Satish SrinivasanDepartment of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Icksoo LeeDankook University College of Medicine, Yongin-si, Gyeonggi-do, South Korea.
Amy B RosenfeldDepartment of Molecular Pharmacology and Therapeutics, Loyola University Health Sciences Division, Maywood, IL, 60153, USA.
Mai TsukikawaDivision of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia and University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Rui XiaoDepartment of Biostatistics and Epidemiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Mary A SelakMitochondria Research Core Facility, The Children's Hospital of Philadelphia Research Institute, Philadelphia, PA, 19104, USA.
Joshua J CoonDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA; Genome Center of Wisconsin, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Alexander S HebertDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA; Genome Center of Wisconsin, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Paul A GrimsrudDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Young Joon KwonDivision of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia and University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA. Electronic address: kwonyo@sas.upenn.edu.
David J PagliariniDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Xiaowu GaiDepartment of Molecular Pharmacology and Therapeutics, Loyola University Health Sciences Division, Maywood, IL, 60153, USA.
Theodore G SchurrDepartment of Anthropology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Maik HüttemannCenter for Molecular Medicine and Genetics and Cardiovascular Research Institute, Wayne State University School of Medicine, Detroit, MI, 48201, USA.
Eiko Nakamaru-OgisoDepartment of Biochemistry and Biophysics, University of Pennsylvania School of Medicine, Philadelphia, PA, 19104, USA.
Marni J FalkDivision of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia and University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA. Electronic address: falkm@email.chop.edu.
University of Pennsylvania · USChildren's Hospital of Philadelphia · USEnergy Center of Wisconsin · USUniversity of Wisconsin–Madison · USDankook University · KRWayne State University · US

Funding

Regulation of Mitochondrial Metabolism by Post-Translational ModificationsR01DK098672 · NIDDK · WASHINGTON UNIVERSITY · PI David J Pagliarini · 2013 to 2026
$4.8M
Pharmacologic treatment of mitochondrial complex I dysfunction in C. elegansR01HD065858 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI FALK, MARNI J · 2010 to 2014
$2.0M
Proton pumping mechanism in complex IR01GM097409 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI OGISO, EIKO · 2011 to 2015
$1.5M
Translational Genomic Study of Mitochondrial Complex I Dysfunction in C. elegansK08DK073545 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI FALK, MARNI J · 2005 to 2009
$666k
NICHD NIH HHS R01 HD065858NICHD NIH HHS R01-HD065858-01A1NIDDK NIH HHS K08 DK073545NIDDK NIH HHS K08-DK073545NIDDK NIH HHS R01 DK098672NIGMS NIH HHS R01 GM097409
6 · The paper itself

Abstract

Mitochondrial DNA (mtDNA) sequence variation can influence the penetrance of complex diseases and climatic adaptation. While studies in geographically defined human populations suggest that mtDNA mutations become fixed when they have conferred metabolic capabilities optimally suited for a specific environment, it has been challenging to definitively assign adaptive functions to specific mtDNA sequence variants in mammals. We investigated whether mtDNA genome variation functionally influences Caenorhabditis elegans wild isolates of distinct mtDNA lineages and geographic origins. We found that, relative to N2 (England) wild-type nematodes, CB4856 wild isolates from a warmer native climate (Hawaii) had a unique p.A12S amino acid substitution in the mtDNA-encoded COX1 core catalytic subunit of mitochondrial complex IV (CIV). Relative to N2, CB4856 worms grown at 20°C had significantly increased CIV enzyme activity, mitochondrial matrix oxidant burden, and sensitivity to oxidative stress but had significantly reduced lifespan and mitochondrial membrane potential. Interestingly, mitochondrial membrane potential was significantly increased in CB4856 grown at its native temperature of 25°C. A transmitochondrial cybrid worm strain, chpIR (M, CB4856>N2), was bred as homoplasmic for the CB4856 mtDNA genome in the N2 nuclear background. The cybrid strain also displayed significantly increased CIV activity, demonstrating that this difference results from the mtDNA-encoded p.A12S variant. However, chpIR (M, CB4856>N2) worms had significantly reduced median and maximal lifespan relative to CB4856, which may relate to their nuclear-mtDNA genome mismatch. Overall, these data suggest that C. elegans wild isolates of varying geographic origins may adapt to environmental challenges through mtDNA variation to modulate critical aspects of mitochondrial energy metabolism.

Indexed as

Amino Acid SubstitutionAnimalsAnimals, Genetically ModifiedCaenorhabditis elegansCaenorhabditis elegans ProteinsCell RespirationDNA, MitochondrialElectron Transport Complex IVEnergy MetabolismGenetic VariationGeographyMaleMitochondriaModels, MolecularCaenorhabditis elegans ProteinsDNA, MitochondrialElectron Transport Complex IVadaptationbioenergeticsCB4856mitochondriaN2

Identifiers

PMID24534730
PMCPMC4067970
OpenAlexW1968971029

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.