Evidence map›Paper›PMID 24533043›Full record

ArticlePloS one2014

Saliva microbiota carry caries-specific functional gene signatures.

Fang Yang, Kang Ning, Xingzhi Chang, Xiao Yuan, Qichao Tu, Tong Yuan, Ye Deng, Christopher L Hemme, Joy Van Nostrand, Xinping Cui and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
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  8. [Oral microbiota: a promising predictor of human oral and systemic diseases].Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2015
    Article
  9. Article
  10. Functional expression of dental plaque microbiota.Frontiers in cellular and infection microbiology · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Fang YangOral Research Center, Qingdao Municipal Hospital, Qingdao, Shandong, China.
Kang NingShandong Key Laboratory of Energy Genetics, CAS Key Laboratory of Biofuels and BioEnergy Genome Center, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong, China.
Xingzhi ChangShandong Key Laboratory of Energy Genetics, CAS Key Laboratory of Biofuels and BioEnergy Genome Center, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong, China.
Xiao YuanOral Research Center, Qingdao Municipal Hospital, Qingdao, Shandong, China.
Qichao TuInstitute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, Oklahoma, United States of America.
Tong YuanInstitute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, Oklahoma, United States of America.
Ye DengInstitute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, Oklahoma, United States of America.
Christopher L HemmeInstitute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, Oklahoma, United States of America.
Joy Van NostrandInstitute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, Oklahoma, United States of America.
Xinping CuiDepartment of Statistics, University of California, Riverside, California, United States of America.
Zhili HeInstitute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, Oklahoma, United States of America.
Zhenggang ChenOral Research Center, Qingdao Municipal Hospital, Qingdao, Shandong, China.
Dawei GuoOral Research Center, Qingdao Municipal Hospital, Qingdao, Shandong, China.
Jiangbo YuOral Research Center, Qingdao Municipal Hospital, Qingdao, Shandong, China.
Yue ZhangOral Research Center, Qingdao Municipal Hospital, Qingdao, Shandong, China.
Jizhong ZhouInstitute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, Oklahoma, United States of America.
Jian XuShandong Key Laboratory of Energy Genetics, CAS Key Laboratory of Biofuels and BioEnergy Genome Center, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong, China.
University of Oklahoma · USQingdao University · CNQingdao Institute of Bioenergy and Bioprocess Technology · CNQingdao Municipal Hospital · CNUniversity of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human saliva microbiota is phylogenetically divergent among host individuals yet their roles in health and disease are poorly appreciated. We employed a microbial functional gene microarray, HuMiChip 1.0, to reconstruct the global functional profiles of human saliva microbiota from ten healthy and ten caries-active adults. Saliva microbiota in the pilot population featured a vast diversity of functional genes. No significant distinction in gene number or diversity indices was observed between healthy and caries-active microbiota. However, co-presence network analysis of functional genes revealed that caries-active microbiota was more divergent in non-core genes than healthy microbiota, despite both groups exhibited a similar degree of conservation at their respective core genes. Furthermore, functional gene structure of saliva microbiota could potentially distinguish caries-active patients from healthy hosts. Microbial functions such as Diaminopimelate epimerase, Prephenate dehydrogenase, Pyruvate-formate lyase and N-acetylmuramoyl-L-alanine amidase were significantly linked to caries. Therefore, saliva microbiota carried disease-associated functional signatures, which could be potentially exploited for caries diagnosis.

Indexed as

Gene Expression ProfilingAdolescentAdultDental CariesFemaleHumansMaleMicrobiotaOligonucleotide Array Sequence AnalysisPilot ProjectsSalivaSpecies SpecificityYoung Adult

Identifiers

PMID24533043
PMCPMC3922703
OpenAlexW2046673902

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.