Evidence map›Paper›PMID 24532263›Full record

ArticleJournal of neuro-oncology2014

Analysis of KIAA1549-BRAF fusion gene expression and IDH1/IDH2 mutations in low grade pediatric astrocytomas.

Gabriela Rampazzo Cruz, Indhira Dias Oliveira, Laís Moraes, Mário Del Giudice Paniago, Maria Teresa de Seixas Alves, Andrea Maria Capellano, Nasjla Saba-Silva, Sérgio Cavalheiro, Janete Maria Cerutti, Silvia Regina Caminada Toledo

Abstract read
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In one paragraph

Article in Journal of neuro-oncology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. IDH-mutant gliomas with additional class-defining molecular events.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2021
    Article
  6. Article
  7. Anaplastic glioneuronal tumor withIntractable & rare diseases research · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. An integrative molecular and genomic analysis of pediatric hemispheric low-grade gliomas: an update.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2016
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Gabriela Rampazzo CruzDepartment of Pediatrics, Pediatrics Oncology Institute-GRAACC (Grupo de Apoio ao Adolescente e à Criança com Câncer), UNIFESP (Federal University of São Paulo), Rua Botucatu, no 743, Floor 8 - Genetics Laboratory, Vila Clementino, São Paulo, SP, 04023-062, Brazil, gabi.rampazzo@gmail.com.
Indhira Dias Oliveira
Laís Moraes
Mário Del Giudice Paniago
Maria Teresa de Seixas Alves
Andrea Maria Capellano
Nasjla Saba-Silva
Sérgio Cavalheiro
Janete Maria Cerutti
Silvia Regina Caminada Toledo
Support group for adolescents and children with cancer · BRUniversidade Federal de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Low-grade astrocytomas comprise about 30 % of the central nervous system tumors in children. Several investigations have searched a correlation between the BRAF gene fusions alterations and mutations at IDH1 and IDH2 genes in low grade pediatric astrocytomas. This study identified the expression of KIAA1549-BRAF fusion gene and BRAF V600E mutation, mutations at exon 4 of the IDH1 and IDH2 genes in samples of pilocytic astrocytomas (PA) and grade-II astrocytomas (A-II) pediatric patients. The correlation between these alterations and the clinical profile of the patients was also evaluated. Eighty-two samples of low-grade astrocytomas (65 PA and 17 A-II) were analyzed by PCR and sequencing for each of the targets identified. We identified the KIAA1549-BRAF fusion transcript in 45 % of the samples. BRAF V600E and BRAFins598T mutations were detected in 7 and 1 % of the samples, respectively. Mutations in the R132/R172 residues of the IDH1/IDH2 genes were detected in only two samples, and the G105G polymorphism (rs11554137:C>T) was identified in ten patients. Additionally, we observed two mutations out of the usual hotspots at IDH1 and IDH2 genes. We observed a smaller frequency of mutations in IDHs genes than previously described, but since the prior studies were composed of adult or mixed (adults and children) samples, we believe that our results represent a relevant contribution to the growing knowledge in low grade childhood astrocytomas.

Indexed as

AdolescentAstrocytomaChildChild, PreschoolFemaleHumansInfantInfant, NewbornIsocitrate DehydrogenaseMaleMutationNeoplasm GradingOncogene Proteins, FusionProto-Oncogene Proteins B-rafReverse Transcriptase Polymerase Chain ReactionYoung AdultBRAF protein, humanIDH1 protein, humanIDH2 protein, humanIsocitrate DehydrogenaseOncogene Proteins, FusionProto-Oncogene Proteins B-raf

Identifiers

PMID24532263
OpenAlexW2043380218

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.