Evidence map›Paper›PMID 24530795›Full record

ArticleJournal of molecular biology2014

Structural and functional analysis of the GerD spore germination protein of Bacillus species.

Yunfeng Li, Kai Jin, Sonali Ghosh, Parvathimadhavi Devarakonda, Kristina Carlson, Andrew Davis, Kerry-Ann V Stewart, Elizabeth Cammett, Patricia Pelczar Rossi, Barbara Setlow and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Characterization of germinant receptors ofCurrent research in microbial sciences · 2025
    Article
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  6. Moderate High-Pressure Superdormancy inApplied and environmental microbiology · 2022
    Article
  7. Review
  8. Article
  9. Structural and functional analyses of the N-terminal domain of the A subunit of aProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Yunfeng LiDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Kai JinDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Sonali GhoshDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Parvathimadhavi DevarakondaDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Kristina CarlsonDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Andrew DavisDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Kerry-Ann V StewartDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Elizabeth CammettDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Patricia Pelczar RossiDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Barbara SetlowDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Min LuPublic Health Research Institute Center, Department of Microbiology and Molecular Genetics, New Jersey Medical School, Rutgers University, Newark, NJ 07103, USA.
Peter SetlowDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA.
Bing HaoDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030-3305, USA. Electronic address: bhao@uchc.edu.
UConn Health · USRutgers, The State University of New Jersey · US

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
The Role of Scavenger Receptor gp340 in Mucosal HIV-1 Transmission and InhibitionR01AI094599 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI LU, MIN, MALAMUD, DANIEL · 2011 to 2016
$3.9M
Structural studies of substrate recognition and specificity by the SCF ubiquitinR01GM099948 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HAO, BING · 2012 to 2016
$1.4M
NIAID NIH HHS AI094599NIAID NIH HHS R01 AI094599NIBIB NIH HHS P30 EB009998NIBIB NIH HHS P30-EB009998NIGMS NIH HHS GM099948NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM099948
6 · The paper itself

Abstract

Spore germination in Bacillus species represents an excellent model system with which to study the molecular mechanisms underlying the nutritional control of growth and development. Binding of specific chemical nutrients to their cognate receptors located in the spore inner membrane triggers the germination process that leads to a resumption of metabolism in spore outgrowth. Recent studies suggest that the inner membrane GerD lipoprotein plays a critical role in the receptor-mediated activation of downstream germination events. The 121-residue core polypeptide of GerD (GerD⁶⁰⁻¹⁸⁰) from Geobacillus stearothermophilus forms a stable α-helical trimer in aqueous solution. The 2.3-Å-resolution crystal structure of the trimer reveals a neatly twisted superhelical rope, with unusual supercoiling induced by parallel triple-helix interactions. The overall geometry comprises three interleaved hydrophobic screws of interacting helices linked by short turns that have not been seen before. Using complementation analysis in a series of Bacillus subtilis gerD mutants, we demonstrated that alterations in the GerD trimer structure have profound effects on nutrient germination. This important structure-function relationship of trimeric GerD is supported by our identification of a dominant negative gerD mutation in B. subtilis. These results and those of others lead us to propose that GerD mediates clustering of germination proteins in the inner membrane of dormant spores and thus promotes the rapid and cooperative germination response to nutrients.

Indexed as

Amino Acid SequenceBacillus subtilisBacterial ProteinsCrystallography, X-RayDNA Mutational AnalysisGenetic Complementation TestGeobacillus stearothermophilusLipoproteinsMembrane ProteinsModels, MolecularMolecular Sequence DataProtein ConformationProtein MultimerizationSequence AlignmentSpores, BacterialBacterial ProteinsLipoproteinsMembrane ProteinsBacillusGerDgerminant receptorsspore germinationspores

Identifiers

PMID24530795
PMCPMC4038265
OpenAlexW1996395240

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.