Evidence map›Paper›PMID 24530480›Full record

ArticleGene2014

Position of premature termination codons determines susceptibility of hERG mutations to nonsense-mediated mRNA decay in long QT syndrome.

Qiuming Gong, Matthew R Stump, Zhengfeng Zhou

Abstract read
In one paragraph

Article in Gene, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Non-missense variants of KCNH2 show better outcomes in type 2 long QT syndrome.Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology · 2023
    Article
  3. Article
  4. The LratInternational journal of molecular sciences · 2021
    Article
  5. Article
  6. Article
  7. Article
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  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Qiuming GongKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR, USA.
Matthew R StumpKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR, USA.
Zhengfeng ZhouKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR, USA. Electronic address: zhouzh@ohsu.edu.
Oregon Health & Science University · US

Funding

Pathogenesis of HERG Mutations in Human Long QT SyndromeR01HL068854 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI ZHOU, ZHENGFENG · 2002 to 2018
$5.7M
Training in Translational Science and Cardiovascular MedicineT32HL094294 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI ALKAYED, NABIL J · 2009 to 2018
$3.5M
NHLBI NIH HHS HL-68854NHLBI NIH HHS R01 HL068854NHLBI NIH HHS T32 HL094294NHLBI NIH HHS T32HL094294
6 · The paper itself

Abstract

The degradation of human ether-a-go-go-related gene (hERG, KCNH2) transcripts containing premature termination codon (PTC) mutations by nonsense-mediated mRNA decay (NMD) is an important mechanism of long QT syndrome type 2 (LQT2). The mechanisms governing the recognition of PTC-containing hERG transcripts as NMD substrates have not been established. We used a minigene system to study two frameshift mutations, R1032Gfs 25 and D1037Rfs 82. R1032Gfs 25 introduces a PTC in exon 14, whereas D1037Rfs 82 causes a PTC in the last exon (exon 15). We showed that R1032Gfs 25, but not D1037Rfs 82, reduced the level of mutant mRNA compared to the wild-type minigene in an NMD-dependent manner. The deletion of intron 14 prevented degradation of R1032Gfs 25 mRNA indicating that a downstream intron is required for NMD. The recognition and elimination of PTC-containing transcripts by NMD required that the mutation be positioned >54-60 nt upstream of the 3'-most exon-exon junction. Finally, we used a full-length hERG splicing-competent construct to show that inhibition of downstream intron splicing by antisense morpholino oligonucleotides inhibited NMD and rescued the functional expression of a third LQT2 mutation, Y1078. The present study defines the positional requirements for the susceptibility of LQT2 mutations to NMD and posits that the majority of reported LQT2 nonsense and frameshift mutations are potential targets of NMD.

Indexed as

Codon, NonsenseERG1 Potassium ChannelEther-A-Go-Go Potassium ChannelsHumansLong QT SyndromeMorpholinosMutationNonsense Mediated mRNA DecayPatch-Clamp TechniquesRNA, Small InterferingCodon, NonsenseERG1 Potassium ChannelEther-A-Go-Go Potassium ChannelsKCNH2 protein, humanMorpholinosRNA, Small InterferingArrhythmiaKCNH2Long QT syndromePatch-clampPotassium channels

Identifiers

PMID24530480
PMCPMC4142825
OpenAlexW2074478661

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.