Evidence map›Paper›PMID 24526689›Full record

ArticleThe Journal of biological chemistry2014

The U4/U6 recycling factor SART3 has histone chaperone activity and associates with USP15 to regulate H2B deubiquitination.

Lindsey Long, Joseph P Thelen, Melonnie Furgason, Mahmood Haj-Yahya, Ashraf Brik, Dongmei Cheng, Junmin Peng, Tingting Yao

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Histone H2B ubiquitylation: Connections to transcription and effects on chromatin structure.Biochimica et biophysica acta. Gene regulatory mechanisms · 2024
    Review
  8. Article
  9. Review
  10. LncRNAPNAS nexus · 2023
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Spotlight on USP4: Structure, Function, and Regulation.Frontiers in cell and developmental biology · 2021
    Review
  17. Article
  18. Review
  19. USP38 Couples Histone Ubiquitination and Methylation via KDM5B to Resolve Inflammation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Lindsey LongFrom the Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523.
Joseph P Thelen
Melonnie Furgason
Mahmood Haj-Yahya
Ashraf Brik
Dongmei Cheng
Junmin Peng
Tingting Yao
Colorado State University · USBen-Gurion University of the Negev · ILSt. Jude Children's Research Hospital · US

Funding

Regulation of a Deubiquitinating Enzyme in Proteolysis and Chromatin RemodelingR01GM098401 · NIGMS · COLORADO STATE UNIVERSITY · PI YAO, TINGTING · 2011 to 2021
$2.9M
NIGMS NIH HHS R01 GM098401NIGMS NIH HHS R01GM098401
6 · The paper itself

Abstract

Post-translational modifications of histone proteins produce dynamic signals that regulate the structure and function of chromatin. Mono-ubiquitination of H2B in the histone tail (at Lys-123 in yeast or Lys-120 in humans) is a conserved modification that has been implicated in the regulation of transcription, replication, and DNA repair processes. In a search for direct effectors of ubH2B, we identified a deubiquitinating enzyme, Usp15, through affinity purification with a nonhydrolyzable ubH2B mimic. In the nucleus, Usp15 indirectly associates with the ubH2B E3 ligase, RNF20/RNF40, and directly associates with a component of the splicing machinery, SART3 (also known as TIP110 or p110). These physical interactions place Usp15 in the vicinity of actively transcribed DNA. Importantly we found that SART3 has previously unrecognized histone chaperone activities. SART3, but not the well-characterized histone chaperone Nap1, enhances Usp15 binding to ubH2B and facilitates deubiquitination of ubH2B in free histones but not in nucleosomes. These results suggest that SART3 recruits ubH2B, which may be evicted from DNA during transcription, for deubiquitination by Usp15. In light of the function played by SART3 in U4/U6 di-snRNP formation, our discovery points to a direct link between eviction-coupled erasure of the ubiquitin mark from ubH2B and co-transcriptional pre-mRNA splicing.

Indexed as

UbiquitinationAnimalsAntigens, NeoplasmCell LineHistonesHumansNucleosomesRibonucleoprotein, U4-U6 Small NuclearRNA-Binding ProteinsRNA SplicingSubstrate SpecificityTranscription, GeneticUbiquitin-Protein LigasesUbiquitin-Specific ProteasesAntigens, NeoplasmHistonesNucleosomesRibonucleoprotein, U4-U6 Small NuclearRNA-Binding ProteinsRNF20 protein, humanRNF40 protein, humanSART3 protein, humanUbiquitin-Protein LigasesUbiquitin-Specific ProteasesUSP15 protein, humanDeubiquitinationHistone ChaperoneHistone ModificationRNA SplicingSART3ubH2BUbiquitinUSP15

Identifiers

PMID24526689
PMCPMC3979369
OpenAlexW2091604056

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.