Evidence map›Paper›PMID 24525048›Full record

ArticleClinical immunology (Orlando, Fla.)2014

High-throughput sequencing of natively paired antibody chains provides evidence for original antigenic sin shaping the antibody response to influenza vaccination.

Yann-Chong Tan, Lisa K Blum, Sarah Kongpachith, Chia-Hsin Ju, Xiaoyong Cai, Tamsin M Lindstrom, Jeremy Sokolove, William H Robinson

Abstract read
In one paragraph

Article in Clinical immunology (Orlando, Fla.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
9.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 107 citations in OpenAlex.

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  13. Original Antigenic Sin: How Original? How Sinful?Cold Spring Harbor perspectives in medicine · 2021
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11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yann-Chong TanDivision of Immunology and Rheumatology, Stanford University, CCSR 4135, 269 Campus Dr, Stanford, CA 94305, USA; VA Palo Alto Health Care System, 3801 Miranda Ave, Palo Alto, CA 94304, USA; Stanford Immunology Program, Stanford University School of Medicine, Stanford, CA 94305, USA.
Lisa K BlumDivision of Immunology and Rheumatology, Stanford University, CCSR 4135, 269 Campus Dr, Stanford, CA 94305, USA; VA Palo Alto Health Care System, 3801 Miranda Ave, Palo Alto, CA 94304, USA.
Sarah KongpachithDivision of Immunology and Rheumatology, Stanford University, CCSR 4135, 269 Campus Dr, Stanford, CA 94305, USA; VA Palo Alto Health Care System, 3801 Miranda Ave, Palo Alto, CA 94304, USA; Stanford Immunology Program, Stanford University School of Medicine, Stanford, CA 94305, USA.
Chia-Hsin JuDivision of Immunology and Rheumatology, Stanford University, CCSR 4135, 269 Campus Dr, Stanford, CA 94305, USA; VA Palo Alto Health Care System, 3801 Miranda Ave, Palo Alto, CA 94304, USA.
Xiaoyong CaiDivision of Immunology and Rheumatology, Stanford University, CCSR 4135, 269 Campus Dr, Stanford, CA 94305, USA; VA Palo Alto Health Care System, 3801 Miranda Ave, Palo Alto, CA 94304, USA.
Tamsin M LindstromDivision of Immunology and Rheumatology, Stanford University, CCSR 4135, 269 Campus Dr, Stanford, CA 94305, USA.
Jeremy SokoloveDivision of Immunology and Rheumatology, Stanford University, CCSR 4135, 269 Campus Dr, Stanford, CA 94305, USA; VA Palo Alto Health Care System, 3801 Miranda Ave, Palo Alto, CA 94304, USA.
William H RobinsonDivision of Immunology and Rheumatology, Stanford University, CCSR 4135, 269 Campus Dr, Stanford, CA 94305, USA; VA Palo Alto Health Care System, 3801 Miranda Ave, Palo Alto, CA 94304, USA; Stanford Immunology Program, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address: wrobins@stanford.edu.
Stanford University · USVA Palo Alto Health Care System · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Training Program in Adult and Pediatric RheumatologyT32AR050942 · NIAMS · STANFORD UNIVERSITY · PI LEWIS, DAVID BRAM, ROBINSON, WILLIAM H · 2005 to 2025
$6.6M
Large-Scale Characterization of Autoantibody Responses in Rheumatoid ArthritisR01AR063676 · NIAMS · STANFORD UNIVERSITY · PI ROBINSON, WILLIAM H · 2013 to 2017
$1.7M
Proteomic Identification of Actionable Biomarkers in Rheumatoid ArthritisRC1AR058713 · NIAMS · STANFORD UNIVERSITY · PI ROBINSON, WILLIAM H · 2009 to 2010
$1.0M
NHLBI NIH HHS N01-HV-00242NIAID NIH HHS T32 AI007290NIAID NIH HHS U19 AI057229NIAMS NIH HHS R01 AR063676NIAMS NIH HHS RC1 AR058713NIAMS NIH HHS T32 AR050942
6 · The paper itself

Abstract

We developed a DNA barcoding method to enable high-throughput sequencing of the cognate heavy- and light-chain pairs of the antibodies expressed by individual B cells. We used this approach to elucidate the plasmablast antibody response to influenza vaccination. We show that >75% of the rationally selected plasmablast antibodies bind and neutralize influenza, and that antibodies from clonal families, defined by sharing both heavy-chain VJ and light-chain VJ sequence usage, do so most effectively. Vaccine-induced heavy-chain VJ regions contained on average >20 nucleotide mutations as compared to their predicted germline gene sequences, and some vaccine-induced antibodies exhibited higher binding affinities for hemagglutinins derived from prior years' seasonal influenza as compared to their affinities for the immunization strains. Our results show that influenza vaccination induces the recall of memory B cells that express antibodies that previously underwent affinity maturation against prior years' seasonal influenza, suggesting that 'original antigenic sin' shapes the antibody response to influenza vaccination.

Indexed as

Amino Acid SequenceAntibodies, NeutralizingAntibodies, ViralAntigens, ViralB-LymphocytesHemagglutinins, ViralHigh-Throughput Nucleotide SequencingHumansImmunoglobulin GImmunoglobulin Heavy ChainsImmunoglobulin Light ChainsImmunologic MemoryInfluenza A Virus, H1N2 SubtypeInfluenza A Virus, H3N2 SubtypeInfluenza, HumanInfluenza VaccinesAntibodies, NeutralizingAntibodies, ViralAntigens, ViralHemagglutinins, ViralImmunoglobulin GImmunoglobulin Heavy ChainsImmunoglobulin Light ChainsInfluenza VaccinesVaccines, SubunitAntibody;B cellInfluenza;

Identifiers

PMID24525048
PMCPMC4006370
OpenAlexW2121869835

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.