Evidence map›Paper›PMID 24523505›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2014

TCR scanning of peptide/MHC through complementary matching of receptor and ligand molecular flexibility.

William F Hawse, Soumya De, Alex I Greenwood, Linda K Nicholson, Jaroslav Zajicek, Evgenii L Kovrigin, David M Kranz, K Christopher Garcia, Brian M Baker

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. The Energetic Landscape of Catch Bonds in TCR Interfaces.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  7. Identification of HLA-E BindingJournal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Structural understanding of T cell receptor triggering.Cellular & molecular immunology · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

William F HawseDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556;
Soumya De
Alex I Greenwood
Linda K Nicholson
Jaroslav Zajicek
Evgenii L Kovrigin
David M Kranz
K Christopher Garcia
Brian M Baker
Cornell University · USUniversity of Notre Dame · USMarquette University · USStanford University · USUniversity of Illinois Urbana-Champaign · US

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
INDIANA CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTE (UL1): BPCAUL1RR025761 · NCRR · INDIANA UNIVERSITY INDIANAPOLIS · PI SHEKHAR, ANANTHA · 2008 to 2011
$21.0M
TRAINING IN MOLECULAR PHYSICS OF BIOLOGICAL SYSTEMST32GM008267 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WANG, MICHELLE D. · 1988 to 2021
$9.6M
Physical Basis for T Cell Receptor Binding and ActivityR01GM067079 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BAKER, BRIAN M · 2003 to 2015
$3.5M
Continual Development of Protein Docking AlgorithmsR01GM084884 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WENG, ZHIPING · 2009 to 2012
$1.2M
Acquisition of an ITC200 isothermal titration calorimeter for Univ. of Notre DameS10RR027898 · NCRR · UNIVERSITY OF NOTRE DAME · PI BAKER, BRIAN M · 2010 to 2010
$125k
Howard Hughes Medical InstituteNCRR NIH HHS P41 RR015301NCRR NIH HHS RR025761NCRR NIH HHS S10 RR027898NCRR NIH HHS UL1 RR025761NIGMS NIH HHS GM067079NIGMS NIH HHS GM084884NIGMS NIH HHS R01 GM067079NIGMS NIH HHS R01 GM084884NIGMS NIH HHS T32 GM008267
6 · The paper itself

Abstract

Although conformational changes in TCRs and peptide Ags presented by MHC protein (pMHC) molecules often occur upon binding, their relationship to intrinsic flexibility and role in ligand selectivity are poorly understood. In this study, we used nuclear magnetic resonance to study TCR-pMHC binding, examining recognition of the QL9/H-2L(d) complex by the 2C TCR. Although the majority of the CDR loops of the 2C TCR rigidify upon binding, the CDR3β loop remains mobile within the TCR-pMHC interface. Remarkably, the region of the QL9 peptide that interfaces with CDR3β is also mobile in the free pMHC and in the TCR-pMHC complex. Determination of conformational exchange kinetics revealed that the motions of CDR3β and QL9 are closely matched. The matching of conformational exchange in the free proteins and its persistence in the complex enhances the thermodynamic and kinetic stability of the TCR-pMHC complex and provides a mechanism for facile binding. We thus propose that matching of structural fluctuations is a component of how TCRs scan among potential ligands for those that can bind with sufficient stability to enable T cell signaling.

Indexed as

AnimalsComplementarity Determining RegionsKineticsLigandsMagnetic Resonance SpectroscopyMajor Histocompatibility ComplexMiceModels, MolecularMolecular ConformationOligopeptidesProtein BindingProtein ConformationProtein Structure, TertiaryReceptors, Antigen, T-CellComplementarity Determining RegionsLigandsOligopeptidesQL9 peptideReceptors, Antigen, T-Cell

Identifiers

PMID24523505
PMCPMC3992338
OpenAlexW2113773464

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.