Evidence map›Paper›PMID 24523286›Full record

ArticleMolecular biology of the cell2014

The role of spartin and its novel ubiquitin binding region in DALIS occurrence.

Amelia B Karlsson, Jacqueline Washington, Valentina Dimitrova, Christopher Hooper, Alexander Shekhtman, Joanna C Bakowska

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Frontiers in plant science · 2021
    Article
  5. A novel missense mutation (c.1006C>T) ofJournal of genetics · 2020
    Article
  6. PB1 and UBA domains of p62 are essential for aggresome-like induced structure formation.Biochemical and biophysical research communications · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. Protein monoubiquitylation: targets and diverse functions.Genes to cells : devoted to molecular & cellular mechanisms · 2015
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Amelia B KarlssonDepartment of Molecular Pharmacology and Therapeutics, Loyola University Chicago, Maywood, IL 60153 Department of Chemistry, State University of New York at Albany, Albany, NY 12222 Department of Physiology, University of Pennsylvania, Philadelphia, PA 19104 Department of Oncology, University of Wisconsin-Madison, Madison, WI 53705.
Jacqueline Washington
Valentina Dimitrova
Christopher Hooper
Alexander Shekhtman
Joanna C Bakowska
Loyola University Chicago · USUniversity at Albany, State University of New York · USUniversity of Pennsylvania · USUniversity of Wisconsin–Madison · US

Funding

Real Time (RT) In-cell NMR technology to study protein interactions in live cellsR01GM085006 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI SHEKHTMAN, ALEXANDER · 2010 to 2021
$2.4M
The role of spartin in autophagy of lipid droplets: Implications for SPG20 diseasR01NS073967 · NINDS · LOYOLA UNIVERSITY CHICAGO · PI BAKOWSKA, JOANNA C · 2012 to 2016
$1.6M
NIGMS NIH HHS R01 GM085006NINDS NIH HHS 1R01NS073967-01A1NINDS NIH HHS R01 NS073967
6 · The paper itself

Abstract

Troyer syndrome is an autosomal recessive hereditary spastic paraplegia (HSP) caused by frameshift mutations in the SPG20 gene that results in a lack of expression of the truncated protein. Spartin is a multifunctional protein, yet only two conserved domains--a microtubule-interacting and trafficking domain and a plant-related senescence domain involved in cytokinesis and mitochondrial physiology, respectively--have been defined. We have shown that overexpressed spartin binds to the Ile44 hydrophobic pocket of ubiquitin, suggesting spartin might contain a ubiquitin-binding domain. In the present study, we demonstrate that spartin contributes to the formation of dendritic aggresome-like induced structures (DALIS) through a unique ubiquitin-binding region (UBR). Using short hairpin RNA, we knocked down spartin in RAW264.7 cells and found that DALIS frequency decreased; conversely, overexpression of spartin increased the percentage of cells containing DALIS. Using nuclear magnetic resonance spectroscopy, we characterized spartin's UBR and defined the UBR's amino acids that are key for ubiquitin binding. We also found that spartin, via the UBR, binds Lys-63-linked ubiquitin chains but does not bind Lys-48-linked ubiquitin chains. Finally, we demonstrate that spartin's role in DALIS formation depends on key residues within its UBR.

Indexed as

Amino Acid SequenceAnimalsCarrier ProteinsCell LineCytoplasmic StructuresDendritic CellsGlutathione TransferaseHumansMiceProtein BindingProtein Structure, TertiaryRNA InterferenceRNA, Small InterferingSpastic Paraplegia, HereditaryUbiquitinCarrier ProteinsGlutathione TransferaseRNA, Small InterferingSPG20 protein, mouseUbiquitin

Identifiers

PMID24523286
PMCPMC3982999
OpenAlexW2014245144

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.