Evidence map›Paper›PMID 24522724›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2014

Genome-wide association analysis identified SNPs closely linked to a gene resistant to Soil-borne wheat mosaic virus.

Shubing Liu, Xiping Yang, Dadong Zhang, Guihua Bai, Shiaoman Chao, William Bockus

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 42 citations in OpenAlex.

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  8. Capturing Wheat Phenotypes at the Genome Level.Frontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Shubing LiuDepartment of Agronomy, Kansas State University, Manhattan, KS, 66506, USA.
Xiping Yang
Dadong Zhang
Guihua Bai
Shiaoman Chao
William Bockus
Kansas State University · USAgricultural Research Service · USCenter for Grain and Animal Health Research · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageUsing association and linkage mapping, two SNP markers closely linked to the SBWMV resistance gene on chromosome 5D were identified and can be used to select the gene in breeding. Soil-borne wheat mosaic virus (SBWMV) disease is a serious viral disease of winter wheat growing areas worldwide. SBWMV infection can significantly reduce grain yield up to 80 %. Developing resistant wheat cultivars is the only feasible strategy to reduce the losses. In this study, wheat Infinium iSelect Beadchips with 9 K wheat SNPs were used to genotype an association mapping population of 205 wheat accessions. Six new SNPs from two genes were identified to be significantly associated with the gene for SBWMV resistance on chromosome 5D. The SNPs and Xgwm469, an SSR marker that has been reported to be associated with the gene, were mapped close to the gene using F6-derived recombinant inbred lines from the cross between a resistant parent 'Heyne' and a susceptible parent 'Trego'. Two representative SNPs, wsnp_CAP11_c209_198467 and wsnp_JD_c4438_5568170, from the two linked genes in wheat were converted into KBioscience Competitive Allele-Specific Polymerase assays and can be easily used in marker-assisted selection to improve wheat resistance to SBWMV in breeding.

Indexed as

Plant VirusesPolymorphism, Single NucleotideChromosome MappingChromosomes, PlantDisease ResistanceGenetic Association StudiesGenetic LinkageGenetic MarkersGenome, PlantHaplotypesLinkage DisequilibriumPlant DiseasesTriticumGenetic Markers

Identifiers

PMID24522724
OpenAlexW2035174987

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.