Evidence map›Paper›PMID 24522181›Full record

ArticleJournal of cell science2014

A cascade of ER exit site assembly that is regulated by p125A and lipid signals.

David Klinkenberg, Kimberly R Long, Kuntala Shome, Simon C Watkins, Meir Aridor

Abstract read
In one paragraph

Article in Journal of cell science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Cells · 2023
    Review
  4. Sorting and Export of Proteins at the Endoplasmic Reticulum.Cold Spring Harbor perspectives in biology · 2023
    Review
  5. Article
  6. Emerging perspectives on multidomain phosphatidylinositol transfer proteins.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2021
    Review
  7. Article
  8. Article
  9. Review
  10. Life and Death of Fungal Transporters under the Challenge of Polarity.International journal of molecular sciences · 2020
    Review
  11. Article
  12. Lipid synthesis and transport are coupled to regulate membrane lipid dynamics in the endoplasmic reticulum.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
  13. Review
  14. COPII-mediated trafficking at the ER/ERGIC interface.Traffic (Copenhagen, Denmark) · 2019
    Review
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

David KlinkenbergDepartment of Cell Biology, University of Pittsburgh School of Medicine, 3500 Terrace Street, Pittsburgh, PA 15261, USA.
Kimberly R Long
Kuntala Shome
Simon C Watkins
Meir Aridor
University of Pittsburgh · US

Funding

Fluorescent Biosensors for Networks and PathwaysU54GM103529 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI WAGGONER, ALAN S. · 2012 to 2013
$6.3M
COPII Organization and Vesicle Formation at ER Exit SitesR01DK092807 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ARIDOR, MEIR · 2012 to 2013
$447k
NIDDK NIH HHS R01 DK092807NIDDK NIH HHS R01DK092807NIGMS NIH HHS U54 GM103529
6 · The paper itself

Abstract

The inner and outer layers of COPII mediate cargo sorting and vesicle biogenesis. Sec16A and p125A (officially known as SEC23IP) proteins interact with both layers to control coat activity, yet the steps directing functional assembly at ER exit sites (ERES) remain undefined. By using temperature blocks, we find that Sec16A is spatially segregated from p125A-COPII-coated ERES prior to ER exit at a step that required p125A. p125A used lipid signals to control ERES assembly. Within p125A, we defined a C-terminal DDHD domain found in phospholipases and PI transfer proteins that recognized PA and phosphatidylinositol phosphates in vitro and was targeted to PI4P-rich membranes in cells. A conserved central SAM domain promoted self-assembly and selective lipid recognition by the DDHD domain. A basic cluster and a hydrophobic interface in the DDHD and SAM domains, respectively, were required for p125A-mediated functional ERES assembly. Lipid recognition by the SAM-DDHD module was used to stabilize membrane association and regulate the spatial segregation of COPII from Sec16A, nucleating the coat at ERES for ER exit.

Indexed as

Carrier ProteinsEndoplasmic ReticulumHeLa CellsHumansHydrophobic and Hydrophilic InteractionsLiposomesMonomeric GTP-Binding ProteinsPhosphatidylinositol PhosphatesProtein BindingProtein Interaction Domains and MotifsProtein Structure, TertiaryProtein TransportRNA-Binding ProteinsVesicular Transport ProteinsCarrier ProteinsLiposomesMonomeric GTP-Binding Proteinsphosphatidylinositol 4-phosphatePhosphatidylinositol PhosphatesRNA-Binding ProteinsSAR1A protein, humanSEC13 protein, humanSEC16A protein, humanSEC23A protein, humanSEC23IP protein, humanSEC24A protein, humanSEC31A protein, humanVesicular Transport ProteinsCOPIIERESp125APhosphatidylinositol-4-phosphateSec23ip

Identifiers

PMID24522181
PMCPMC3986675
OpenAlexW2132440898

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.