Evidence map›Paper›PMID 24520381›Full record

ArticlePloS one2014

Targeted biomarker profiling of matched primary and metastatic estrogen receptor positive breast cancers.

Erica B Schleifman, Rupal Desai, Jill M Spoerke, Yuanyuan Xiao, Cheryl Wong, Ilma Abbas, Carol O'Brien, Rajesh Patel, Teiko Sumiyoshi, Ling Fu and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Erica B SchleifmanDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Rupal DesaiDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Jill M SpoerkeDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Yuanyuan XiaoDepartment of Biostatistics, Genentech Inc., South San Francisco, California, United States of America.
Cheryl WongDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Ilma AbbasDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Carol O'BrienDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Rajesh PatelDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Teiko SumiyoshiDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Ling FuDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Rachel N TamDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Hartmut KoeppenDepartment of Research Pathology, Genentech Inc., South San Francisco, California, United States of America.
Timothy R WilsonDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Rajiv RajaDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Garret M HamptonDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.
Mark R LacknerDepartment of Oncology Biomarker Development, Genentech Inc., South San Francisco, California, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Patients with newly diagnosed, early stage estrogen receptor positive (ER+) breast cancer often show disease free survival in excess of five years following surgery and systemic adjuvant therapy. An important question is whether diagnostic tumor tissue from the primary lesion offers an accurate molecular portrait of the cancer post recurrence and thus may be used for predictive diagnostic purposes for patients with relapsed, metastatic disease. As the class I phosphatidylinositol 3' kinase (PI3K) pathway is frequently activated in ER+ breast cancer and has been linked to acquired resistance to hormonal therapy, we hypothesized pathway status could evolve over time and treatment. Biomarker analyses were conducted on matched, asynchronous primary and metastatic tumors from 77 patients with ER+ breast cancer. We examined whether PIK3CA and AKT1 alterations or PTEN and Ki67 levels showed differences between primary and metastatic samples. We also sought to look more broadly at gene expression markers reflective of proliferation, molecular subtype, and key receptors and signaling pathways using an mRNA analysis platform developed on the Fluidigm BioMark™ microfluidics system to measure the relative expression of 90 breast cancer related genes in formalin-fixed paraffin-embedded (FFPE) tissue. Application of this panel of biomarker assays to matched tumor pairs showed a high concordance between primary and metastatic tissue, with generally few changes in mutation status, proliferative markers, or gene expression between matched samples. The collection of assays described here has been optimized for FFPE tissue and may have utility in exploratory analyses to identify patient subsets responsive to targeted therapies.

Indexed as

MetabolomeBiomarkers, TumorBreast NeoplasmsClass I Phosphatidylinositol 3-KinasesFemaleGene Expression Regulation, NeoplasticHumansImmunohistochemistryKi-67 AntigenMicrofluidicsMutationNeoplasm MetastasisOligonucleotide Array Sequence AnalysisPhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-aktPTEN PhosphohydrolaseBiomarkers, TumorClass I Phosphatidylinositol 3-KinasesKi-67 AntigenPhosphatidylinositol 3-KinasesPIK3CA protein, humanProto-Oncogene Proteins c-aktPTEN PhosphohydrolasePTEN protein, humanReceptors, Estrogen

Identifiers

PMID24520381
PMCPMC3919784
OpenAlexW2170061824

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.