Evidence map›Paper›PMID 24520371›Full record

ArticlePloS one2014

Prospective surveillance and molecular characterization of seasonal influenza in a university cohort in Singapore.

Ramandeep Kaur Virk, Paul Anantharajah Tambyah, Masafumi Inoue, Elizabeth Ai-Sim Lim, Ka-Wei Chan, Catherine Chua, Boon-Huan Tan

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Ramandeep Kaur VirkDepartment of Medicine, National University of Singapore, Singapore, Singapore.
Paul Anantharajah TambyahDepartment of Medicine, National University of Singapore, Singapore, Singapore.
Masafumi InoueExperimental Therapeutics Centre, Agency for Science, Technology and Research, Singapore, Singapore.
Elizabeth Ai-Sim LimDetection and Diagnostics Laboratory, DSO National Laboratories, Singapore, Singapore.
Ka-Wei ChanDetection and Diagnostics Laboratory, DSO National Laboratories, Singapore, Singapore.
Catherine ChuaUniversity Health Centre, National University of Singapore, Singapore, Singapore.
Boon-Huan TanDetection and Diagnostics Laboratory, DSO National Laboratories, Singapore, Singapore ; Department of Epidemiology and Public Health, National University of Singapore, Singapore, Singapore.
DSO National Laboratories · SGNational University of Singapore · SGAgency for Science, Technology and Research · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSoutheast Asia is believed to be a potential locus for the emergence of novel influenza strains, and therefore accurate sentinel surveillance in the region is critical. Limited information exists on sentinel surveillance of influenza-like illness (ILI) in young adults in Singapore in a University campus setting. The objective of the present study was to determine the proportion of ILI caused by influenza A and B viruses in a university cohort in Singapore. METHODOLOGY/PRINCIPAL

findingsWe conducted a prospective surveillance study from May through October 2007, at the National University of Singapore (NUS). Basic demographic information and nasopharyngeal swabs were collected from students and staff with ILI. Reverse-transcriptase PCR (RT-PCR) and viral isolation were employed to detect influenza viruses. Sequencing of hemagglutinin (HA) and neuraminidase (NA) genes of some representative isolates was also performed. Overall proportions of influenza A and B virus infections were 47/266 (18%) and 9/266 (3%) respectively. The predominant subtype was A/H3N2 (55%) and the rest were A/H1N1 (45%). The overall sensitivity difference for detection of influenza A viruses using RT-PCR and viral isolation was 53%. Phylogenetic analyses of HA and NA gene sequences of Singapore strains showed identities higher than 98% within both the genes. The strains were more similar to strains included in the WHO vaccine recommendation for the following year (2008). Genetic markers of oseltamivir resistance were not detected in any of the sequenced Singapore isolates. CONCLUSIONS/SIGNIFICANCE: HA and NA gene sequences of Singapore strains were similar to vaccine strains for the upcoming influenza season. No drug resistance was found. Sentinel surveillance on university campuses should make use of molecular methods to better detect emerging and re-emerging influenza viral threats.

Indexed as

SeasonsSentinel SurveillanceUniversitiesAdolescentAdultAmino Acid SequenceAnimalsCohort StudiesDrug Resistance, ViralEnzyme InhibitorsFemaleGenetic VariationHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza A virusInfluenza, HumanEnzyme InhibitorsHemagglutinin Glycoproteins, Influenza VirusNeuraminidaseOseltamivir

Identifiers

PMID24520371
PMCPMC3919768
OpenAlexW2084224462

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.