Evidence map›Paper›PMID 24520327›Full record

ArticlePloS one2014

Autism associated gene, engrailed2, and flanking gene levels are altered in post-mortem cerebellum.

Jiyeon Choi, Myka R Ababon, Mai Soliman, Yong Lin, Linda M Brzustowicz, Paul G Matteson, James H Millonig

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

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  11. Aberrant Somatosensory Processing and Connectivity in Mice LackingThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jiyeon ChoiCenter for Advanced Biotechnology and Medicine, Piscataway, New Jersey, United States of America.
Myka R AbabonCenter for Advanced Biotechnology and Medicine, Piscataway, New Jersey, United States of America.
Mai SolimanCenter for Advanced Biotechnology and Medicine, Piscataway, New Jersey, United States of America.
Yong LinCancer Institute of New Jersey, Piscataway, New Jersey, United States of America.
Linda M BrzustowiczDepartment of Genetics, Rutgers University, Piscataway, New Jersey, United States of America.
Paul G MattesonCenter for Advanced Biotechnology and Medicine, Piscataway, New Jersey, United States of America.
James H MillonigCenter for Advanced Biotechnology and Medicine, Piscataway, New Jersey, United States of America ; Department of Neuroscience and Cell Biology, Robert Wood Johnson Medical School, Piscataway, New Jersey, United States of America ; Department of Genetics, Rutgers University, Piscataway, New Jersey, United States of America.
Rutgers, The State University of New Jersey · USCancer Institute of Florida · US

Funding

Identification and Functional Assessment of Autism Susceptibility GenesR01MH076435 · NIMH · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI BRZUSTOWICZ, LINDA M · 2005 to 2009
$2.4M
Identification and Functional Assessment of Autism Susceptibility GenesR01MH076624 · NIMH · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI MILLONIG, JAMES H. · 2005 to 2009
$2.1M
Behavioral and Genetic Biomarker Development for Autism and Related DisordersRC1MH088288 · NIMH · RUTGERS, THE STATE UNIV OF N.J. · PI BRZUSTOWICZ, LINDA M · 2009 to 2010
$994k
NIMH NIH HHS R01 MH076435NIMH NIH HHS R01 MH076624NIMH NIH HHS RC1 MH088288
6 · The paper itself

Abstract

backgroundPrevious genetic studies demonstrated association between the transcription factor engrailed2 (EN2) and Autism Spectrum Disorder (ASD). Subsequent molecular analysis determined that the EN2 ASD-associated haplotype (rs1861972-rs1861973 A-C) functions as a transcriptional activator to increase gene expression. EN2 is flanked by 5 genes, serotonin receptor5a (HTR5A), insulin induced gene1 (INSIG1), canopy1 homolog (CNPY1), RNA binding motif protein33 (RBM33), and sonic hedgehog (SHH). These flanking genes are co-expressed with EN2 during development and coordinate similar developmental processes. To investigate if mRNA levels for these genes are altered in individuals with autism, post-mortem analysis was performed.

methodsqRT-PCR quantified mRNA levels for EN2 and the 5 flanking genes in 78 post-mortem cerebellar samples. mRNA levels were correlated with both affection status and rs1861972-rs1861973 genotype. Molecular analysis investigated whether EN2 regulates flanking gene expression.

resultsEN2 levels are increased in affected A-C/G-T individuals (p = .0077). Affected individuals also display a significant increase in SHH and a decrease in INSIG1 levels. Rs1861972-rs1861973 genotype is correlated with significant increases for SHH (A-C/G-T) and CNPY1 (G-T/G-T) levels. Human cell line over-expression and knock-down as well as mouse knock-out analysis are consistent with EN2 and SHH being co-regulated, which provides a possible mechanism for increased SHH post-mortem levels.

conclusionsEN2 levels are increased in affected individuals with an A-C/G-T genotype, supporting EN2 as an ASD susceptibility gene. SHH, CNPY1, and INSIG1 levels are also significantly altered depending upon affection status or rs1861972-rs1861973 genotype. Increased EN2 levels likely contribute to elevated SHH expression observed in the post-mortem samples.

Indexed as

Genetic Predisposition to DiseasePostmortem ChangesAnimalsAutistic DisorderCerebellumDNA, IntergenicEngrailed 2 ProteinGene Expression RegulationGenome, HumanHaplotypesHedgehog ProteinsHEK293 CellsHomeodomain ProteinsHumansMiceNerve Tissue ProteinsDNA, IntergenicEngrailed 2 ProteinHedgehog ProteinsHomeodomain ProteinsNerve Tissue ProteinsSHH protein, human

Identifiers

PMID24520327
PMCPMC3919719
OpenAlexW2039226995

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.