Evidence map›Paper›PMID 24520320›Full record

ArticlePloS one2014

New susceptibility and resistance HLA-DP alleles to HBV-related diseases identified by a trans-ethnic association study in Asia.

Nao Nishida, Hiromi Sawai, Koichi Kashiwase, Mutsuhiko Minami, Masaya Sugiyama, Wai-Kay Seto, Man-Fung Yuen, Nawarat Posuwan, Yong Poovorawan, Sang Hoon Ahn and 33 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 45 citations in OpenAlex.

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  19. Article
  20. Clinical Relevance of HLA Gene Variants in HBV Infection.Journal of immunology research · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 20 institutions in 4 countries.

Nao NishidaThe Research Center for Hepatitis and Immunology, National Center for Global Health and Medicine, Ichikawa, Chiba, Japan ; Department of Human Genetics, Graduate School of Medicine, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Hiromi SawaiDepartment of Human Genetics, Graduate School of Medicine, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Koichi KashiwaseHLA Laboratory, Japanese Red Cross Kanto-Koshinetsu Block Blood Center, Koutou-ku, Tokyo, Japan.
Mutsuhiko MinamiHLA Laboratory, Japanese Red Cross Kanto-Koshinetsu Block Blood Center, Koutou-ku, Tokyo, Japan.
Masaya SugiyamaThe Research Center for Hepatitis and Immunology, National Center for Global Health and Medicine, Ichikawa, Chiba, Japan.
Wai-Kay SetoDepartment of Medicine, Queen Mary Hospital, Hong Kong.
Man-Fung YuenDepartment of Medicine, Queen Mary Hospital, Hong Kong.
Nawarat PosuwanFaculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Yong PoovorawanFaculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Sang Hoon AhnDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.
Kwang-Hyub HanDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.
Kentaro MatsuuraDepartment of Virology & Liver Unit, Nagoya City University Graduate School of Medical Sciences, Nagoya, Aichi, Japan.
Yasuhito TanakaDepartment of Virology & Liver Unit, Nagoya City University Graduate School of Medical Sciences, Nagoya, Aichi, Japan.
Masayuki KurosakiDivision of Gastroenterology and Hepatology, Musashino Red Cross Hospital, Musashino, Tokyo, Japan.
Yasuhiro AsahinaDepartment of Liver Disease Control, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo, Japan ; Department of Gastroenterology and Hepatology, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo, Japan.
Namiki IzumiDivision of Gastroenterology and Hepatology, Musashino Red Cross Hospital, Musashino, Tokyo, Japan.
Jong-Hon KangDepartment of Internal Medicine, Teine Keijinkai Hospital, Sapporo, Hokkaido, Japan.
Shuhei HigeDepartment of Internal Medicine, Hokkaido University Graduate School of Medicine, Sapporo, Hokkaido, Japan.
Tatsuya IdeDivision of Gastroenterology, Department of Medicine, Kurume University School of Medicine, Kurume, Fukuoka, Japan.
Kazuhide YamamotoDepartment of Gastroenterology and Hepatology, Okayama University Graduate School of Medicine, Dentistry, and Pharmaceutical Sciences, Okayama, Okayama, Japan.
Isao SakaidaGastroenterology and Hepatology, Yamaguchi University Graduate School of Medicine, Ube, Yamaguchi, Japan.
Yoshikazu MurawakiFaculty of Medicine, Tottori University, Tottori, Tottori, Japan.
Yoshito ItohMolecular Gastroenterology and Hepatology, Kyoto Prefectural University of Medicine, Kyoto, Kyoto, Japan.
Akihiro TamoriDepartment of Hepatology, Osaka City University Graduate School of Medicine, Osaka, Osaka, Japan.
Etsuro OritoDepartment of Gastroenterology, Nagoya Daini Red Cross Hospital, Nagoya, Aichi, Japan.
Yoichi HiasaDepartment of Gastroenterology and Metabology, Ehime University Graduate School of Medicine, Toon, Ehime, Japan.
Masao HondaDepartment of Gastroenterology, Kanazawa University Graduate School of Medicine, Kanazawa, Ishikawa, Japan.
Shuichi KanekoDepartment of Gastroenterology, Kanazawa University Graduate School of Medicine, Kanazawa, Ishikawa, Japan.
Eiji MitaDepartment of Gastroenterology and Hepatology, National Hospital Organization Osaka National Hospital, Osaka, Osaka, Japan.
Kazuyuki SuzukiDivision of Gastroenterology and Hepatology, Department of Internal Medcine, Iwate Medical University, Morioka, Iwate, Japan.
Keisuke HinoDivision of Hepatology and Pancreatology, Kawasaki Medical College, Kurashiki, Okayama, Japan.
Eiji TanakaDepartment of Medicine, Shinshu University School of Medicine, Matsumoto, Nagano, Japan.
Satoshi MochidaDivision of Gastroenterology and Hepatology, Saitama Medical University, Iruma, Saitama, Japan.
Masaaki WatanabeDepartment of Gastroenterology, Kitasato University School of Medicine, Sagamihara, Kanagawa, Japan.
Yuichiro EguchiDepartment of Internal Medicine, Saga Medical School, Saga, Saga, Japan.
Naohiko MasakiThe Research Center for Hepatitis and Immunology, National Center for Global Health and Medicine, Ichikawa, Chiba, Japan.
Kazumoto MurataThe Research Center for Hepatitis and Immunology, National Center for Global Health and Medicine, Ichikawa, Chiba, Japan.
Masaaki KorenagaThe Research Center for Hepatitis and Immunology, National Center for Global Health and Medicine, Ichikawa, Chiba, Japan.
Yoriko MawatariThe Research Center for Hepatitis and Immunology, National Center for Global Health and Medicine, Ichikawa, Chiba, Japan.
Jun OhashiFaculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Minae KawashimaDepartment of Human Genetics, Graduate School of Medicine, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Katsushi TokunagaDepartment of Human Genetics, Graduate School of Medicine, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Masashi MizokamiThe Research Center for Hepatitis and Immunology, National Center for Global Health and Medicine, Ichikawa, Chiba, Japan.
National Center for Global Health and Medicine · JPThe University of Tokyo · JPChulalongkorn University · THJapanese Red Cross Society, Japan · JPKanazawa University · JPMusashino Red Cross Hospital · JPNagoya City University · JPQueen Mary Hospital · CNYonsei University · KREhime University · JPHokkaido University · JPIwate Medical University · JPJapanese Red Cross Nagoya Daini Hospital · JPKawasaki Medical School · JPKitasato University · JPKurume University · JPKyoto Prefectural University of Medicine · JPOkayama University · JPOsaka City University · JPOsaka National Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previous studies have revealed the association between SNPs located on human leukocyte antigen (HLA) class II genes, including HLA-DP and HLA-DQ, and chronic hepatitis B virus (HBV) infection, mainly in Asian populations. HLA-DP alleles or haplotypes associated with chronic HBV infection or disease progression have not been fully identified in Asian populations. We performed trans-ethnic association analyses of HLA-DPA1, HLA-DPB1 alleles and haplotypes with hepatitis B virus infection and disease progression among Asian populations comprising Japanese, Korean, Hong Kong, and Thai subjects. To assess the association between HLA-DP and chronic HBV infection and disease progression, we conducted high-resolution (4-digit) HLA-DPA1 and HLA-DPB1 genotyping in a total of 3,167 samples, including HBV patients, HBV-resolved individuals and healthy controls. Trans-ethnic association analyses among Asian populations identified a new risk allele HLA-DPB1*09 ∶ 01 (P = 1.36 × 10(-6); OR= 1.97; 95% CI, 1.50-2.59) and a new protective allele DPB1*02 ∶ 01 (P = 5.22 × 10(-6); OR = 0.68; 95% CI, 0.58-0.81) to chronic HBV infection, in addition to the previously reported alleles. Moreover, DPB1*02 ∶ 01 was also associated with a decreased risk of disease progression in chronic HBV patients among Asian populations (P = 1.55 × 10(-7); OR = 0.50; 95% CI, 0.39-0.65). Trans-ethnic association analyses identified Asian-specific associations of HLA-DP alleles and haplotypes with HBV infection or disease progression. The present findings will serve as a base for future functional studies of HLA-DP molecules in order to understand the pathogenesis of HBV infection and the development of hepatocellular carcinoma.

Indexed as

AllelesGenetic Association StudiesGenetic Predisposition to DiseaseAdolescentAdultAgedAged, 80 and overAsiaDisease ResistanceEthnicityFemaleHaplotypesHepatitis BHepatitis B virusHLA-DP AntigensHumansHLA-DP Antigens

Identifiers

PMID24520320
PMCPMC3919706
OpenAlexW1969925663

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.