Evidence map›Paper›PMID 24520176›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Functional epigenetics approach identifies BRM/SMARCA2 as a critical synthetic lethal target in BRG1-deficient cancers.

Gregory R Hoffman, Rami Rahal, Frank Buxton, Kay Xiang, Gregory McAllister, Elizabeth Frias, Linda Bagdasarian, Janina Huber, Alicia Lindeman, Dongshu Chen and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 244 papers.

0numbers the graph read from it
0cells of the map it votes in
244citing papers in PubMed
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

244 citing papers in PubMed, 409 citations in OpenAlex.

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  7. Characterization ofBiomolecules · 2026
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184 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 2 institutions in 2 countries.

Gregory R HoffmanDepartments of Developmental and Molecular Pathways and Oncology, Novartis Institutes for BioMedical Research, Cambridge, MA 02139.
Rami Rahal
Frank Buxton
Kay Xiang
Gregory McAllister
Elizabeth Frias
Linda Bagdasarian
Janina Huber
Alicia Lindeman
Dongshu Chen
Rodrigo Romero
Nadire Ramadan
Tanushree Phadke
Kristy Haas
Mariela Jaskelioff
Boris G Wilson
Matthew J Meyer
Veronica Saenz-Vash
Huili Zhai
Vic E Myer
Jeffery A Porter
Nicholas Keen
Margaret E McLaughlin
Craig Mickanin
Charles W M Roberts
Frank Stegmeier
Zainab Jagani
Novartis (Switzerland) · CHDana-Farber Cancer Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Defects in epigenetic regulation play a fundamental role in the development of cancer, and epigenetic regulators have recently emerged as promising therapeutic candidates. We therefore set out to systematically interrogate epigenetic cancer dependencies by screening an epigenome-focused deep-coverage design shRNA (DECODER) library across 58 cancer cell lines. This screen identified BRM/SMARCA2, a DNA-dependent ATPase of the mammalian SWI/SNF (mSWI/SNF) chromatin remodeling complex, as being essential for the growth of tumor cells that harbor loss of function mutations in BRG1/SMARCA4. Depletion of BRM in BRG1-deficient cancer cells leads to a cell cycle arrest, induction of senescence, and increased levels of global H3K9me3. We further demonstrate the selective dependency of BRG1-mutant tumors on BRM in vivo. Genetic alterations of the mSWI/SNF chromatin remodeling complexes are the most frequent among chromatin regulators in cancers, with BRG1/SMARCA4 mutations occurring in ∼10-15% of lung adenocarcinomas. Our findings position BRM as an attractive therapeutic target for BRG1 mutated cancers. Because BRG1 and BRM function as mutually exclusive catalytic subunits of the mSWI/SNF complex, we propose that such synthetic lethality may be explained by paralog insufficiency, in which loss of one family member unveils critical dependence on paralogous subunits. This concept of "cancer-selective paralog dependency" may provide a more general strategy for targeting other tumor suppressor lesions/complexes with paralogous subunits.

Indexed as

Blotting, WesternCell Cycle CheckpointsCell Line, TumorCellular SenescenceDNA HelicasesEpigenesis, GeneticGene Knockdown TechniquesGene LibraryHistonesHumansImmunoprecipitationMultiprotein ComplexesNeoplasmsNuclear ProteinsRNA, Small InterferingTranscription FactorsDNA HelicasesHistonesMultiprotein ComplexesNuclear ProteinsRNA, Small InterferingSMARCA2 protein, humanSMARCA4 protein, humanTranscription Factors

Identifiers

PMID24520176
PMCPMC3939885
OpenAlexW2031541159

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.