Evidence map›Paper›PMID 24520163›Full record

ArticleeLife2014

Diversity and plasticity in Rab GTPase nucleotide release mechanism has consequences for Rab activation and inactivation.

Lars Langemeyer, Ricardo Nunes Bastos, Yiying Cai, Aymelt Itzen, Karin M Reinisch, Francis A Barr

Open access · goldAbstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 70 citations in OpenAlex.

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  12. Detecting Endogenous Rab8 Activation.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  13. Crystal structure of the GDP-bound GTPase domain of Rab5a from Leishmania donovani.Acta crystallographica. Section F, Structural biology communications · 2020
    Article
  14. Review
  15. Article
  16. Overexpression ofSmall GTPases · 2020
    Article
  17. Stochastic activation and bistability in a Rab GTPase regulatory network.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Lars LangemeyerDepartment of Biochemistry, University of Oxford, Oxford, United Kingdom.
Ricardo Nunes Bastos
Yiying Cai
Aymelt Itzen
Karin M Reinisch
Francis A Barr
University of Oxford · GBYale University · USTechnical University of Munich · DE

Funding

Wellcome Trust 091911Wellcome Trust 097769Wellcome Trust 097769/Z/11/Z
6 · The paper itself

Abstract

Ras superfamily GTPase activation and inactivation occur by canonical nucleotide exchange and GTP hydrolysis mechanisms. Despite conservation of active-site residues, the Ras-related Rab GTPase activation pathway differs from Ras and between different Rabs. Analysis of DENND1-Rab35, Rabex-Rab5, TRAPP-Rab1 and DrrA-Rab1 suggests Rabs have the potential for activation by distinct GDP-release pathways. Conserved active-site residues in the Rab switch II region stabilising the nucleotide-free form differentiate these pathways. For DENND1-Rab35 and DrrA-Rab1 the Rab active-site glutamine, often mutated to create constitutively active forms, is involved in GEF mediated GDP-release. By contrast, in Rab5 the switch II aspartate is required for Rabex mediated GDP-release. Furthermore, Rab1 switch II glutamine mutants refractory to activation by DrrA can be activated by TRAPP, showing that a single Rab can be activated by more than one mechanistically distinct GDP-release pathway. These findings highlight plasticity in the activation mechanisms of closely related Rab GTPases. DOI: http://dx.doi.org/10.7554/eLife.01623.001.

Indexed as

Adenosine TriphosphateAspartic AcidBacterial ProteinsCatalytic DomainDeath Domain Receptor Signaling Adaptor ProteinsDNA-Binding ProteinsEnzyme ActivationGlutamineGuanine Nucleotide Exchange FactorsHeLa CellsHumansHydrolysisListeriaModels, MolecularMutagenesis, Site-DirectedMutationAdenosine TriphosphateAspartic AcidBacterial ProteinsDeath Domain Receptor Signaling Adaptor ProteinsDENND1B protein, humanDNA-Binding ProteinsDrrA protein, BacteriaGlutamineGuanine Nucleotide Exchange Factorsrab1 GTP-Binding ProteinsRAB35 protein, humanRAB5C protein, humanrab5 GTP-Binding ProteinsRABGEF1 protein, humanrab GTP-Binding Proteinsmembrane trafficnucleotide exchange factorRab GTPase

Identifiers

PMID24520163
PMCPMC3919270
OpenAlexW2049878966

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.