Evidence map›Paper›PMID 24520112›Full record

ArticleNucleic acids research2014

Bimodal high-affinity association of Brd4 with murine leukemia virus integrase and mononucleosomes.

Ross C Larue, Matthew R Plumb, Brandon L Crowe, Nikoloz Shkriabai, Amit Sharma, Julia DiFiore, Nirav Malani, Sriram S Aiyer, Monica J Roth, Frederic D Bushman and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

  1. Pooled it
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  4. Review
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  7. Article
  8. Review
  9. Review
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  11. Article
  12. Structure and function of retroviral integrase.Nature reviews. Microbiology · 2022
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Interactions between Retroviruses and the Host Cell Genome.Molecular therapy. Methods & clinical development · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Ross C LarueCenter for Retrovirus Research and College of Pharmacy, The Ohio State University, Columbus, Ohio 43210, USA, Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, Department of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA and Department of Pharmacology, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey, Piscataway, NJ 08854, USA.
Matthew R Plumb
Brandon L Crowe
Nikoloz Shkriabai
Amit Sharma
Julia DiFiore
Nirav Malani
Sriram S Aiyer
Monica J Roth
Frederic D Bushman
Mark P Foster
Mamuka Kvaratskhelia
Rutgers, The State University of New Jersey · USUniversity of Pennsylvania · USThe Ohio State University · US

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
Favored Sites for HIV Integration in the Human GenomeR01AI052845 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D · 2002 to 2017
$5.6M
Integration of Murine Retroviral VectorsR01GM070837 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI ROTH, MONICA J. · 2005 to 2013
$2.1M
Retroviral Integration & HDAC inhibitorsR01GM088808 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI ROTH, MONICA J. · 2009 to 2012
$1.3M
Cellular Cofactors of Murine Leukemia Virus IntegraseR21AI109522 · NIAID · OHIO STATE UNIVERSITY · PI KVARATSKHELIA, MAMUKA · 2014 to 2015
$423k
NIAID NIH HHS AI052845NIAID NIH HHS AI062520NIGMS NIH HHS GM070837NIGMS NIH HHS GM088808
6 · The paper itself

Abstract

The importance of understanding the molecular mechanisms of murine leukemia virus (MLV) integration into host chromatin is highlighted by the development of MLV-based vectors for human gene-therapy. We have recently identified BET proteins (Brd2, 3 and 4) as the main cellular binding partners of MLV integrase (IN) and demonstrated their significance for effective MLV integration at transcription start sites. Here we show that recombinant Brd4, a representative of the three BET proteins, establishes complementary high-affinity interactions with MLV IN and mononucleosomes (MNs). Brd4(1-720) but not its N- or C-terminal fragments effectively stimulate MLV IN strand transfer activities in vitro. Mass spectrometry- and NMR-based approaches have enabled us to map key interacting interfaces between the C-terminal domain of BRD4 and the C-terminal tail of MLV IN. Additionally, the N-terminal fragment of Brd4 binds to both DNA and acetylated histone peptides, allowing it to bind tightly to MNs. Comparative analyses of the distributions of various histone marks along chromatin revealed significant positive correlations between H3- and H4-acetylated histones, BET protein-binding sites and MLV-integration sites. Our findings reveal a bimodal mechanism for BET protein-mediated MLV integration into select chromatin locations.

Indexed as

Bromodomain Containing ProteinsCell Cycle ProteinsDNAHEK293 CellsHistonesHumansIntegrasesLeukemia Virus, MurineNuclear ProteinsNucleosomesProtein BindingProtein Interaction Domains and MotifsTranscription FactorsVirus IntegrationBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsDNAHistonesIntegrasesNuclear ProteinsNucleosomesTranscription Factors

Identifiers

PMID24520112
PMCPMC4005663
OpenAlexW2110921380

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.