Evidence map›Paper›PMID 24518087›Full record

ArticleJournal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer2014

Discovery of new membrane-associated proteins overexpressed in small-cell lung cancer.

Sebahat Ocak, David B Friedman, Heidi Chen, Jamie A Ausborn, Mohamed Hassanein, Bruno Detry, Birgit Weynand, Frank Aboubakar, Charles Pilette, Yves Sibille and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

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  8. Downregulation of RUVBL1 inhibits proliferation of lung adenocarcinoma cells by G1/S phase cell cycle arrest via multiple mechanisms.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Sebahat Ocak*Pôle Pneumologie, ORL et Dermatologie, PNEU, Institut de Recherche Expérimentale et Clinique (IREC), Université Catholique de Louvain (UCL), Brussels, Belgium; †Division of Pneumology, Department of Internal Medicine, CHU Mont-Godinne, UCL, Yvoir, Belgium; ‡Department of Biochemistry, Vanderbilt University, Nashville, Tennessee; §Department of Biostatistics, Cancer Biostatistics Center, Vanderbilt University, Nashville, Tennessee; ‖Department of Cancer Biology, Vanderbilt University, Nashville, Tennessee; ¶Division of Allergy, Pulmonary, and Critical Care Medicine, Department of Medicine, Vanderbilt University, Nashville, Tennessee; #Department of Pathology, CHU Mont-Godinne, UCL, Yvoir, Belgium; ***Division of Pneumology, Department of Internal Medicine, Cliniques Universitaires St-Luc, UCL, Brussels, Belgium; ††Thoracic Program, Vanderbilt-Ingram Comprehensive Cancer Center, Nashville, Tennessee; and ‡‡Section of Pulmonary and Critical Care Medicine, Veterans Affairs Medical Center, Nashville, Tennessee.
David B Friedman
Heidi Chen
Jamie A Ausborn
Mohamed Hassanein
Bruno Detry
Birgit Weynand
Frank Aboubakar
Charles Pilette
Yves Sibille
Pierre P Massion
Vanderbilt University · USCliniques Universitaires Saint-Luc · BECHU Dinant Godinne UCL Namur · BE

Funding

TARGETING NOTCH 3 IN LUNG CANCERP50CA090949 · NCI · VANDERBILT UNIVERSITY · PI MASSION, PIERRE P. · 2001 to 2011
$24.1M
Pannoramic 250 BF Flash Tissue Microarray systemS10OD016355 · OD · VANDERBILT UNIVERSITY · PI BOYD, KELLI L. · 2014 to 2014
$453k
NCI NIH HHS CA90949NCI NIH HHS P50 CA090949
6 · The paper itself

Abstract

introductionSmall-cell lung cancer (SCLC) is the most aggressive subtype of lung cancer, with no early detection strategy or targeted therapy currently available. We hypothesized that difference gel electrophoresis (DIGE) may identify membrane-associated proteins (MAPs) specific to SCLC, advance our understanding of SCLC biology, and discover new biomarkers of SCLC.

methodsMAP lysates were prepared from three SCLCs, three non-small-cell lung cancers, and three immortalized normal bronchial epithelial cell lines and coanalyzed by DIGE. Subsequent protein identification was performed by mass spectrometry. Proteins were submitted to Ingenuity Pathway Analysis. Candidate biomarkers were validated by Western blotting (WB) and immunohistochemistry (IHC).

resultsPrincipal component analysis on the global DIGE data set demonstrated that the four replicates derived from each of the nine cell lines clustered closely, as did samples within the same histological group. One hundred thirty-seven proteins were differentially expressed in SCLC compared with non-small-cell lung cancer and immortalized normal bronchial epithelial cells. These proteins were overrepresented in cellular/tissue morphology networks. Dihydropyrimidinase-related protein 2, guanine nucleotide-binding protein alpha-q, laminin receptor 1, pontin, and stathmin 1 were selected as candidate biomarkers among MAPs overexpressed in SCLC. Overexpression of all candidates but RSSA in SCLC was verified by WB and/or IHC on tissue microarrays. These proteins were significantly associated with SCLC histology and survival in univariables analyses.

conclusionDIGE analysis of a membrane-associated subproteome discovered overexpression of dihydropyrimidinase-related protein 2, guanine nucleotide-binding protein alpha-q, RUVB1, and stathmin 1 in SCLC. Results were verified by WB and/or IHC in primary tumors, suggesting that investigating their functional relevance in SCLC progression is warranted. Association with survival requires further validation in larger clinical data sets.

Indexed as

AdenocarcinomaAgedBiomarkers, TumorBlotting, WesternBronchiCarcinoma, Non-Small-Cell LungCarcinoma, Squamous CellCells, CulturedElectrophoresis, Gel, Two-DimensionalFemaleHumansImmunoenzyme TechniquesLung NeoplasmsMaleMembrane ProteinsMiddle AgedBiomarkers, TumorMembrane Proteins

Identifiers

PMID24518087
PMCPMC4028683
OpenAlexW1967983020

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.