Evidence map›Paper›PMID 24516399›Full record

ArticlePLoS genetics2014

DAF-16/FoxO directly regulates an atypical AMP-activated protein kinase gamma isoform to mediate the effects of insulin/IGF-1 signaling on aging in Caenorhabditis elegans.

Jennifer M A Tullet, Caroline Araiz, Matthew J Sanders, Catherine Au, Alexandre Benedetto, Irene Papatheodorou, Emily Clark, Kathrin Schmeisser, Daniel Jones, Eugene F Schuster and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 74 citations in OpenAlex.

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  18. Allosteric regulation ofmicroPublication biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Jennifer M A TulletInstitute of Healthy Ageing, and Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.
Caroline AraizInstitute of Healthy Ageing, and Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.
Matthew J SandersInstitute of Healthy Ageing, and Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.
Catherine AuInstitute of Healthy Ageing, and Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.
Alexandre BenedettoInstitute of Healthy Ageing, and Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.
Irene PapatheodorouEMBL, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Emily ClarkInstitute of Healthy Ageing, and Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.
Kathrin SchmeisserInstitute of Healthy Ageing, and Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.
Daniel JonesInstitute of Healthy Ageing, and Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.
Eugene F SchusterInstitute of Healthy Ageing, and Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.
Janet M ThorntonEMBL, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
David GemsInstitute of Healthy Ageing, and Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.
University College London · GBEuropean Bioinformatics Institute · GBWellcome Trust · GB

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Medical Research Council G0800339NIH HHS P40 OD010440Wellcome Trust 098565
6 · The paper itself

Abstract

The DAF-16/FoxO transcription factor controls growth, metabolism and aging in Caenorhabditis elegans. The large number of genes that it regulates has been an obstacle to understanding its function. However, recent analysis of transcript and chromatin profiling implies that DAF-16 regulates relatively few genes directly, and that many of these encode other regulatory proteins. We have investigated the regulation by DAF-16 of genes encoding the AMP-activated protein kinase (AMPK), which has α, β and γ subunits. C. elegans has 5 genes encoding putative AMP-binding regulatory γ subunits, aakg-1-5. aakg-4 and aakg-5 are closely related, atypical isoforms, with orthologs throughout the Chromadorea class of nematodes. We report that ∼75% of total γ subunit mRNA encodes these 2 divergent isoforms, which lack consensus AMP-binding residues, suggesting AMP-independent kinase activity. DAF-16 directly activates expression of aakg-4, reduction of which suppresses longevity in daf-2 insulin/IGF-1 receptor mutants. This implies that an increase in the activity of AMPK containing the AAKG-4 γ subunit caused by direct activation by DAF-16 slows aging in daf-2 mutants. Knock down of aakg-4 expression caused a transient decrease in activation of expression in multiple DAF-16 target genes. This, taken together with previous evidence that AMPK promotes DAF-16 activity, implies the action of these two metabolic regulators in a positive feedback loop that accelerates the induction of DAF-16 target gene expression. The AMPK β subunit, aakb-1, also proved to be up-regulated by DAF-16, but had no effect on lifespan. These findings reveal key features of the architecture of the gene-regulatory network centered on DAF-16, and raise the possibility that activation of AMP-independent AMPK in nutritionally replete daf-2 mutant adults slows aging in C. elegans. Evidence of activation of AMPK subunits in mammals suggests that such FoxO-AMPK interactions may be evolutionarily conserved.

Indexed as

AgingAMP-Activated Protein KinasesAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsForkhead Transcription FactorsGene Expression Regulation, DevelopmentalGene Regulatory NetworksInsulinInsulin-Like Growth Factor ILongevityProtein IsoformsReceptor, InsulinSignal TransductionTranscriptional ActivationTranscription FactorsAMP-Activated Protein KinasesCaenorhabditis elegans Proteinsdaf-16 protein, C elegansForkhead Transcription FactorsInsulinInsulin-Like Growth Factor IProtein IsoformsReceptor, InsulinTranscription Factors

Identifiers

PMID24516399
PMCPMC3916255
OpenAlexW2054599245

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.