Evidence map›Paper›PMID 24516393›Full record

ArticlePLoS genetics2014

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants.

Betina M Porcel, France Denoeud, Fred Opperdoes, Benjamin Noel, Mohammed-Amine Madoui, Tansy C Hammarton, Mark C Field, Corinne Da Silva, Arnaud Couloux, Julie Poulain and 19 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 92 citations in OpenAlex.

  1. Transcriptomic Analysis of Trypanosomatids.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  2. Article
  3. Evolutionary divergent kinetoplast genome structure and RNA editing patterns in the trypanosomatidProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Kinetoplast Genome ofTropical medicine and infectious disease · 2023
    Article
  6. Article
  7. Review
  8. Article
  9. The Remarkable Metabolism ofPathogens (Basel, Switzerland) · 2021
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  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 19 institutions in 7 countries.

Betina M PorcelCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France ; Université d'Evry, UMR 8030, Evry, France ; Centre National de Recherche Scientifique (CNRS), UMR 8030, Evry, France.
France DenoeudCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France ; Université d'Evry, UMR 8030, Evry, France ; Centre National de Recherche Scientifique (CNRS), UMR 8030, Evry, France.
Fred Opperdoesde Duve Institute, Université catholique de Louvain, Brussels, Belgium.
Benjamin NoelCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France.
Mohammed-Amine MadouiCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France.
Tansy C HammartonInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.
Mark C FieldDepartment of Pathology, University of Cambridge, Cambridge, United Kingdom.
Corinne Da SilvaCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France.
Arnaud CoulouxCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France.
Julie PoulainCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France.
Michael KatinkaCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France.
Kamel JabbariCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France ; Université d'Evry, UMR 8030, Evry, France ; Centre National de Recherche Scientifique (CNRS), UMR 8030, Evry, France.
Jean-Marc AuryCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France.
David A CampbellDepartment of Microbiology, Immunology & Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, United States of America.
Roxana CintronCenter for Tropical and Emerging Global Diseases and Department of Cellular Biology, University of Georgia, Athens, Georgia, United States of America.
Nicholas J DickensWellcome Trust Centre for Molecular Parasitology, Institute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.
Roberto DocampoCenter for Tropical and Emerging Global Diseases and Department of Cellular Biology, University of Georgia, Athens, Georgia, United States of America.
Nancy R SturmDepartment of Microbiology, Immunology & Molecular Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, United States of America.
V Lila KoumandouBiomedical Research Foundation, Academy of Athens, Athens, Greece.
Sandrine FabreCIRAD, TA A-98/F, Campus International de Baillarguet, Montpellier, France.
Pavel FlegontovInstitute of Parasitology, Biology Centre and Faculty of Sciences, University of South Bohemia, České Budějovice (Budweis), Czech Republic.
Julius LukešInstitute of Parasitology, Biology Centre and Faculty of Sciences, University of South Bohemia, České Budějovice (Budweis), Czech Republic.
Shulamit MichaeliThe Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.
Jeremy C MottramWellcome Trust Centre for Molecular Parasitology, Institute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.
Balázs SzöőrCentre for Immunity, Infection and Evolution, Institute of Immunology and Infection Research, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom.
Dan ZilbersteinFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Frédéric BringaudCentre de Résonance Magnétique des Systèmes Biologiques, Université Bordeaux Segalen, CNRS UMR-5536, Bordeaux, France.
Patrick WinckerCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France ; Université d'Evry, UMR 8030, Evry, France ; Centre National de Recherche Scientifique (CNRS), UMR 8030, Evry, France.
Michel DolletCIRAD, TA A-98/F, Campus International de Baillarguet, Montpellier, France.
Commissariat à l'Énergie Atomique et aux Énergies Alternatives · FRCentre National de la Recherche Scientifique · FRGenoscope · FRUniversity of California, Los Angeles · USUniversity of Georgia · USUniversity of Glasgow · GBAcademy of Athens · GRBar-Ilan University · ILCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRCentre de Résonance Magnétique des Systèmes Biologiques · FRCentre for Immunity, Infection and Evolution · GBCentre National de Recherche en Génomique Humaine · FRCentre Occitanie-Montpellier · FRCzech Academy of Sciences, Biology Centre · CZde Duve Institute · BEInstitute of Parasitology · CZTechnion – Israel Institute of Technology · ILUniversity of Cambridge · GBWellcome Centre for Molecular Parasitology · GB

Funding

Kinetoplastid SL RNA BiogenesisR01AI056034 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CAMPBELL, DAVID A · 2004 to 2013
$3.7M
The contractile vacuole of Trypanosoma cruziR01AI068647 · NIAID · UNIVERSITY OF GEORGIA · PI DOCAMPO, ROBERTO · 2006 to 2010
$1.8M
The isoprenoid pathway from Toxoplasma gondiiR21AI068467 · NIAID · UNIVERSITY OF GEORGIA · PI MORENO, SILVIA N · 2006 to 2007
$400k
Medical Research Council 0700127Medical Research Council G0700127Medical Research Council G0900239NIAID NIH HHS AI056034NIAID NIH HHS R01 AI056034NIAID NIH HHS R01 AI068647NIAID NIH HHS R21 AI068467Wellcome Trust 085349Wellcome Trust 095831Wellcome Trust 92383/Z/10/Z
6 · The paper itself

Abstract

Members of the family Trypanosomatidae infect many organisms, including animals, plants and humans. Plant-infecting trypanosomes are grouped under the single genus Phytomonas, failing to reflect the wide biological and pathological diversity of these protists. While some Phytomonas spp. multiply in the latex of plants, or in fruit or seeds without apparent pathogenicity, others colonize the phloem sap and afflict plants of substantial economic value, including the coffee tree, coconut and oil palms. Plant trypanosomes have not been studied extensively at the genome level, a major gap in understanding and controlling pathogenesis. We describe the genome sequences of two plant trypanosomatids, one pathogenic isolate from a Guianan coconut and one non-symptomatic isolate from Euphorbia collected in France. Although these parasites have extremely distinct pathogenic impacts, very few genes are unique to either, with the vast majority of genes shared by both isolates. Significantly, both Phytomonas spp. genomes consist essentially of single copy genes for the bulk of their metabolic enzymes, whereas other trypanosomatids e.g. Leishmania and Trypanosoma possess multiple paralogous genes or families. Indeed, comparison with other trypanosomatid genomes revealed a highly streamlined genome, encoding for a minimized metabolic system while conserving the major pathways, and with retention of a full complement of endomembrane organelles, but with no evidence for functional complexity. Identification of the metabolic genes of Phytomonas provides opportunities for establishing in vitro culturing of these fastidious parasites and new tools for the control of agricultural plant disease.

Indexed as

Sequence Analysis, DNAAnimalsCocosCoffeeFranceGenomeHumansKinetoplastidaPlant DiseasesSeedsTrypanosomatinaCoffee

Identifiers

PMID24516393
PMCPMC3916237
OpenAlexW2065723116

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.