Evidence map›Paper›PMID 24516392›Full record

ArticlePLoS genetics2014

Canine hereditary ataxia in old english sheepdogs and gordon setters is associated with a defect in the autophagy gene encoding RAB24.

Caryline Agler, Dahlia M Nielsen, Ganokon Urkasemsin, Andrew Singleton, Noriko Tonomura, Snaevar Sigurdsson, Ruqi Tang, Keith Linder, Sampath Arepalli, Dena Hernandez and 8 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

Caryline AglerDepartment of Clinical Sciences, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, United States of America.
Dahlia M NielsenBioinformatics Research Center, North Carolina State University, Raleigh, North Carolina, United States of America.
Ganokon UrkasemsinDepartment of Clinical Sciences, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, United States of America.
Andrew SingletonLaboratory of Neurogenetics, National Institute on Aging, Bethesda, Maryland, United States of America.
Noriko TonomuraBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America ; Department of Clinical Sciences, Tufts Cummings School of Veterinary Medicine, North Grafton, Massachusetts, United States of America.
Snaevar SigurdssonBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Ruqi TangBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Keith LinderDepartment of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, United States of America.
Sampath ArepalliLaboratory of Neurogenetics, National Institute on Aging, Bethesda, Maryland, United States of America.
Dena HernandezLaboratory of Neurogenetics, National Institute on Aging, Bethesda, Maryland, United States of America.
Kerstin Lindblad-TohBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America ; Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Joyce van de LeemputLaboratory of Neurogenetics, National Institute on Aging, Bethesda, Maryland, United States of America.
Alison Motsinger-ReifBioinformatics Research Center, North Carolina State University, Raleigh, North Carolina, United States of America ; Center for Comparative Medicine and Translational Research, North Carolina State University, Raleigh, North Carolina, United States of America.
Dennis P O'BrienDepartment of Veterinary Medicine & Surgery, College of Veterinary Medicine, University of Missouri, Columbia, Missouri, United States of America.
Jerold BellDepartment of Clinical Sciences, Tufts Cummings School of Veterinary Medicine, North Grafton, Massachusetts, United States of America.
Tonya HarrisDepartment of Clinical Sciences, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, United States of America.
Steven SteinbergVCA Veterinary Referral Associates, Gaithersbrug, Maryland, United States of America.
Natasha J OlbyDepartment of Clinical Sciences, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, United States of America ; Center for Comparative Medicine and Translational Research, North Carolina State University, Raleigh, North Carolina, United States of America.
North Carolina State University · USBroad Institute · USNational Institute on Aging · USNew England Disabled Sports · USUniversity of Missouri · US

Funding

Assessment of Candidate Loci in Neurological diseasesZIAAG000957 · NIA · NATIONAL INSTITUTE ON AGING · PI SINGLETON, ANDREW · 2009 to 2024
$12.2M
Genetic analysis in families with neurological diseaseZIAAG000958 · NIA · NATIONAL INSTITUTE ON AGING · PI SINGLETON, ANDREW · 2009 to 2024
$10.9M
6 · The paper itself

Abstract

Old English Sheepdogs and Gordon Setters suffer from a juvenile onset, autosomal recessive form of canine hereditary ataxia primarily affecting the Purkinje neuron of the cerebellar cortex. The clinical and histological characteristics are analogous to hereditary ataxias in humans. Linkage and genome-wide association studies on a cohort of related Old English Sheepdogs identified a region on CFA4 strongly associated with the disease phenotype. Targeted sequence capture and next generation sequencing of the region identified an A to C single nucleotide polymorphism (SNP) located at position 113 in exon 1 of an autophagy gene, RAB24, that segregated with the phenotype. Genotyping of six additional breeds of dogs affected with hereditary ataxia identified the same polymorphism in affected Gordon Setters that segregated perfectly with phenotype. The other breeds tested did not have the polymorphism. Genome-wide SNP genotyping of Gordon Setters identified a 1.9 MB region with an identical haplotype to affected Old English Sheepdogs. Histopathology, immunohistochemistry and ultrastructural evaluation of the brains of affected dogs from both breeds identified dramatic Purkinje neuron loss with axonal spheroids, accumulation of autophagosomes, ubiquitin positive inclusions and a diffuse increase in cytoplasmic neuronal ubiquitin staining. These findings recapitulate the changes reported in mice with induced neuron-specific autophagy defects. Taken together, our results suggest that a defect in RAB24, a gene associated with autophagy, is highly associated with and may contribute to canine hereditary ataxia in Old English Sheepdogs and Gordon Setters. This finding suggests that detailed investigation of autophagy pathways should be undertaken in human hereditary ataxia.

Indexed as

Genome-Wide Association StudyAnimalsAutophagyCerebellar CortexChromosome MappingDog DiseasesDogsHigh-Throughput Nucleotide SequencingHumansMiceMutationPolymorphism, Single Nucleotiderab GTP-Binding ProteinsSpinocerebellar DegenerationsRAB24 protein, humanrab GTP-Binding Proteins

Identifiers

PMID24516392
PMCPMC3916225
OpenAlexW2159381714

What OpenQuestion holds

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LicenceCC0
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.