Evidence map›Paper›PMID 24516391›Full record

ArticlePLoS genetics2014

Oxidative stress is not a major contributor to somatic mitochondrial DNA mutations.

Leslie S Itsara, Scott R Kennedy, Edward J Fox, Selina Yu, Joshua J Hewitt, Monica Sanchez-Contreras, Fernando Cardozo-Pelaez, Leo J Pallanck

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 173 citations in OpenAlex.

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  20. The Fate of Oxidative Strand Breaks in Mitochondrial DNA.Antioxidants (Basel, Switzerland) · 2023
    Article

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Leslie S ItsaraDepartment of Genome Sciences, University of Washington, Seattle, Washington, United States of America ; Molecular and Cellular Biology Program, University of Washington, Seattle, Washington, United States of America.
Scott R KennedyDepartment of Pathology, University of Washington, Seattle, Washington, United States of America.
Edward J FoxDepartment of Pathology, University of Washington, Seattle, Washington, United States of America.
Selina YuDepartment of Genome Sciences, University of Washington, Seattle, Washington, United States of America.
Joshua J HewittDepartment of Genome Sciences, University of Washington, Seattle, Washington, United States of America ; Postbaccalaureate Research Education Program, University of Washington, Seattle, Washington, United States of America.
Monica Sanchez-ContrerasDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, United States of America.
Fernando Cardozo-PelaezDepartment of Biomedical and Pharmaceutical Sciences, University of Montana, Missoula, Montana, United States of America.
Leo J PallanckDepartment of Genome Sciences, University of Washington, Seattle, Washington, United States of America.
University of Washington · USMayo Clinic in Florida · USUniversity of Montana · US

Funding

SPECIFICITY OF OXYGEN DNA DAMAGE AND MUTAGENESISP01AG001751 · NIA · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 1985 to 2021
$29.6M
University of Washington Nathan Shock Center of Excellence in the Basic Biology of AgingP30AG013280 · NIA · UNIVERSITY OF WASHINGTON · PI Su-In Lee · 1995 to 2026
$27.1M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
ROLE OF THE PINK1/PARKIN PATHWAY IN MITOCHONDRIAL DYNAMICS AND TISSUE INTEGRITYR01GM086394 · NIGMS · UNIVERSITY OF WASHINGTON · PI PALLANCK, LEO J · 2009 to 2012
$1.4M
Genetic Analysis of the PINK1-Parkin PathwayR01GM104990 · NIGMS · UNIVERSITY OF WASHINGTON · PI PALLANCK, LEO J · 2013 to 2016
$1.2M
The mitochondrial quality control system in mtDNA heteroplasmy.F31NS071857 · NINDS · UNIVERSITY OF WASHINGTON · PI ITSARA, LESLIE SOOK · 2010 to 2012
$101k
NIA NIH HHS P01 AG001751NIA NIH HHS P30 AG013280NIA NIH HHS T32 AG000057NIGMS NIH HHS R01 GM086394NIGMS NIH HHS R01 GM104990NINDS NIH HHS F31 NS071857
6 · The paper itself

Abstract

The accumulation of somatic mitochondrial DNA (mtDNA) mutations is implicated in aging and common diseases of the elderly, including cancer and neurodegenerative disease. However, the mechanisms that influence the frequency of somatic mtDNA mutations are poorly understood. To develop a simple invertebrate model system to address this matter, we used the Random Mutation Capture (RMC) assay to characterize the age-dependent frequency and distribution of mtDNA mutations in the fruit fly Drosophila melanogaster. Because oxidative stress is a major suspect in the age-dependent accumulation of somatic mtDNA mutations, we also used the RMC assay to explore the influence of oxidative stress on the somatic mtDNA mutation frequency. We found that many of the features associated with mtDNA mutations in vertebrates are conserved in Drosophila, including a comparable somatic mtDNA mutation frequency (∼10(-5)), an increased frequency of mtDNA mutations with age, and a prevalence of transition mutations. Only a small fraction of the mtDNA mutations detected in young or old animals were G∶C to T∶A transversions, a signature of oxidative damage, and loss-of-function mutations in the mitochondrial superoxide dismutase, Sod2, had no detectable influence on the somatic mtDNA mutation frequency. Moreover, a loss-of-function mutation in Ogg1, which encodes a DNA repair enzyme that removes oxidatively damaged deoxyguanosine residues (8-hydroxy-2'-deoxyguanosine), did not significantly influence the somatic mtDNA mutation frequency of Sod2 mutants. Together, these findings indicate that oxidative stress is not a major cause of somatic mtDNA mutations. Our data instead suggests that somatic mtDNA mutations arise primarily from errors that occur during mtDNA replication. Further studies using Drosophila should aid in the identification of factors that influence the frequency of somatic mtDNA mutations.

Indexed as

Oxidative StressAgingAnimalsDNA GlycosylasesDNA, MitochondrialDNA RepairDrosophila melanogasterDrosophila ProteinsHumansMitochondriaModels, AnimalMutationMutation RateReactive Oxygen SpeciesSuperoxide DismutaseSuperoxide Dismutase 2DNA GlycosylasesDNA, MitochondrialDrosophila ProteinsOgg1 protein, DrosophilaReactive Oxygen SpeciesSuperoxide DismutaseSuperoxide Dismutase 2

Identifiers

PMID24516391
PMCPMC3916223
OpenAlexW2012998724

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.