Evidence map›Paper›PMID 24516166›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

H-Ras forms dimers on membrane surfaces via a protein-protein interface.

Wan-Chen Lin, Lars Iversen, Hsiung-Lin Tu, Christopher Rhodes, Sune M Christensen, Jeffrey S Iwig, Scott D Hansen, William Y C Huang, Jay T Groves

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 162 citations in OpenAlex.

  1. Article
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  3. Opto-chemogenetic inhibition of L-type CaCell reports methods · 2024
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  5. Article
  6. Review
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  8. Article
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  10. Review
  11. Article
  12. Article
  13. Structural insights into Ras regulation by SIN1.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. A two-component protein condensate of the EGFR cytoplasmic tail and Grb2 regulates Ras activation by SOS at the membrane.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Single-molecule phospholipase ABiophysical journal · 2022
    Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Wan-Chen LinHoward Hughes Medical Institute and Departments of Chemistry and Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Lars Iversen
Hsiung-Lin Tu
Christopher Rhodes
Sune M Christensen
Jeffrey S Iwig
Scott D Hansen
William Y C Huang
Jay T Groves
Howard Hughes Medical Institute · USLawrence Berkeley National Laboratory · USUniversity of California, Berkeley · US

Funding

Understand the metabolic fitness of naïve T cellsP01AI091580 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARTHUR WEISS · 2011 to 2026
$31.1M
TRANS-NETWORK PROJECTSU54CA143836 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI LIPHARDT, JAN T. · 2009 to 2014
$15.1M
Howard Hughes Medical InstituteNCI NIH HHS U54 CA143836NIAID NIH HHS P01 AI091580
6 · The paper itself

Abstract

The lipid-anchored small GTPase Ras is an important signaling node in mammalian cells. A number of observations suggest that Ras is laterally organized within the cell membrane, and this may play a regulatory role in its activation. Lipid anchors composed of palmitoyl and farnesyl moieties in H-, N-, and K-Ras are widely suspected to be responsible for guiding protein organization in membranes. Here, we report that H-Ras forms a dimer on membrane surfaces through a protein-protein binding interface. A Y64A point mutation in the switch II region, known to prevent Son of sevenless and PI3K effector interactions, abolishes dimer formation. This suggests that the switch II region, near the nucleotide binding cleft, is either part of, or allosterically coupled to, the dimer interface. By tethering H-Ras to bilayers via a membrane-miscible lipid tail, we show that dimer formation is mediated by protein interactions and does not require lipid anchor clustering. We quantitatively characterize H-Ras dimerization in supported membranes using a combination of fluorescence correlation spectroscopy, photon counting histogram analysis, time-resolved fluorescence anisotropy, single-molecule tracking, and step photobleaching analysis. The 2D dimerization Kd is measured to be ∼1 × 10(3) molecules/µm(2), and no higher-order oligomers were observed. Dimerization only occurs on the membrane surface; H-Ras is strictly monomeric at comparable densities in solution. Analysis of a number of H-Ras constructs, including key changes to the lipidation pattern of the hypervariable region, suggest that dimerization is a general property of native H-Ras on membrane surfaces.

Indexed as

Models, MolecularProtein ConformationAmino Acid SequenceCell MembraneDimerizationFluorescence PolarizationHumansMagnetic Resonance SpectroscopyMicroscopy, FluorescenceMolecular Sequence DataProtein Interaction Domains and Motifsras Proteinsras ProteinsRas assayRas signaling

Identifiers

PMID24516166
PMCPMC3939930
OpenAlexW2163104155

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.