ArticleBMC plant biology2014
Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript.
Article in BMC plant biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
22 citing papers in PubMed, 52 citations in OpenAlex.
- Advances in plant male sterility for hybrid seed production: an overview of conditional nuclear male sterile lines and biotechnology-based male sterile systems.Frontiers in plant science · 2025Review
- Mitochondrial genome ofFrontiers in plant science · 2024Article
- Mitochondrial genome variation and intergenomic sequence transfers inFrontiers in plant science · 2024Article
- Assembly and analysis of the complete mitochondrial genome of the Chinese wild dwarf almond (Frontiers in genetics · 2023Article
- Genome-Wide Identification and Analysis of Small Nucleolar RNAs and Their Roles in Regulating Latex Regeneration in the Rubber Tree (Frontiers in plant science · 2021Article
- Unravelling Rubber Tree Growth by Integrating GWAS and Biological Network-Based Approaches.Frontiers in plant science · 2021Article
- Comparative analysis of mitochondrial genomes of soybean cytoplasmic male-sterile lines and their maintainer lines.Functional & integrative genomics · 2021Article
- Mitochondrial Genome ofPlants (Basel, Switzerland) · 2020Article
- Complete sequence of mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2020Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2020Article
- The alternative reality of plant mitochondrial DNA: One ring does not rule them all.PLoS genetics · 2019Article
- High Level of Conservation of Mitochondrial RNA Editing Sites Among FourG3 (Bethesda, Md.) · 2019Article
- Genomic Selection in Rubber Tree Breeding: A Comparison of Models and Methods for Managing G×E Interactions.Frontiers in plant science · 2019Article
- The comparison of four mitochondrial genomes reveals cytoplasmic male sterility candidate genes in cotton.BMC genomics · 2018Article
- Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0.BMC bioinformatics · 2018Article
- Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria.Plant molecular biology · 2018Article
- High-Resolution Genetic Map and QTL Analysis of Growth-Related Traits ofFrontiers in plant science · 2018Article
- Rapid evolutionary divergence of diploid and allotetraploid Gossypium mitochondrial genomes.BMC genomics · 2017Article
- Assembly and analysis of the completeSpringerPlus · 2016Article
- Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding.PloS one · 2016Article
Corrections and comments
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe rubber tree, Hevea brasiliensis, is an important plant species that is commercially grown to produce latex rubber in many countries. The rubber tree variety BPM 24 exhibits cytoplasmic male sterility, inherited from the variety GT 1.
resultsWe constructed the rubber tree mitochondrial genome of a cytoplasmic male sterile variety, BPM 24, using 454 sequencing, including 8 kb paired-end libraries, plus Illumina paired-end sequencing. We annotated this mitochondrial genome with the aid of Illumina RNA-seq data and performed comparative analysis. We then compared the sequence of BPM 24 to the contigs of the published rubber tree, variety RRIM 600, and identified a rearrangement that is unique to BPM 24 resulting in a novel transcript containing a portion of atp9.
conclusionsThe novel transcript is consistent with changes that cause cytoplasmic male sterility through a slight reduction to ATP production efficiency. The exhaustive nature of the search rules out alternative causes and supports previous findings of novel transcripts causing cytoplasmic male sterility.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.